Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.6e-95 352.8 188 100.0
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 7.4e-85 317.4 187 90.9
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.2e-84 315.8 188 90.4
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 3.0e-70 268.9 191 80.6
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.0e-69 266.2 174 85.1
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 2.3e-57 226.1 188 65.4
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 5.0e-57 224.9 189 69.8
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 7.3e-56 221.1 189 65.1
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 2.8e-55 219.2 184 67.4
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 8.0e-55 217.6 184 65.2
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 8.0e-55 217.6 190 67.9
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 8.0e-55 217.6 187 65.2
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 9.8e-53 210.7 179 64.8
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 4.9e-52 208.4 192 60.9
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 1.8e-51 206.5 189 61.4
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 3.2e-51 205.7 189 63.0
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 4.1e-51 205.3 178 63.5
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 4.1e-51 205.3 192 60.9
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 2.0e-50 203.0 183 62.3
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 2.7e-50 202.6 153 69.9
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 7.8e-50 201.1 181 67.4
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 7.8e-50 201.1 205 58.5
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 3.0e-49 199.1 183 61.7
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 3.9e-49 198.7 180 65.0
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 3.9e-49 198.7 172 65.1
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 4.3e-48 195.3 200 57.5
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 7.3e-48 194.5 168 63.7
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 7.3e-48 194.5 175 64.6
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 9.5e-48 194.1 188 61.2
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 2.1e-47 193.0 183 59.6
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 2.1e-47 193.0 187 59.4
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 2.8e-47 192.6 195 59.5
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 3.6e-47 192.2 188 59.0
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 8.0e-47 191.0 186 60.2
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 8.0e-47 191.0 186 60.2
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 1.4e-46 190.3 176 60.8
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 2.3e-46 189.5 146 67.8
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 3.1e-46 189.1 177 61.0
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 3.1e-46 189.1 189 58.2
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 4.0e-46 188.7 179 62.0
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 5.2e-46 188.3 185 61.6
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 6.8e-46 188.0 171 62.6
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 8.9e-46 187.6 175 61.7
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 1.5e-45 186.8 177 61.0
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 2.0e-45 186.4 188 61.7
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 2.6e-45 186.0 176 59.7
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 2.6e-45 186.0 188 56.4
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 5.8e-45 184.9 193 58.5
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 7.5e-45 184.5 192 54.7
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 1.7e-44 183.3 182 59.9
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 1.7e-44 183.3 195 54.4
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 2.9e-44 182.6 188 55.9
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 4.9e-44 181.8 174 59.8
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 4.9e-44 181.8 176 60.2
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 4.9e-44 181.8 172 61.0
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 1.9e-43 179.9 175 60.0
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 1.9e-43 179.9 197 56.9
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 1.9e-43 179.9 199 56.3
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 2.4e-43 179.5 174 59.8
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 2.4e-43 179.5 174 59.8
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 4.1e-43 178.7 129 69.8
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 4.1e-43 178.7 188 55.3
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 7.0e-43 177.9 179 59.8
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 1.2e-42 177.2 184 59.2
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 1.6e-42 176.8 179 59.2
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 2.7e-42 176.0 183 59.6
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 1.3e-41 173.7 183 56.3
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 3.0e-41 172.6 179 54.2
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 3.9e-41 172.2 175 57.1
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 8.6e-41 171.0 186 58.1
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 1.5e-40 170.2 116 74.1
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 1.9e-40 169.9 179 61.5
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 2.5e-40 169.5 201 51.2
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.3e-40 169.1 190 54.7
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 5.6e-40 168.3 176 59.1
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 9.5e-40 167.5 198 52.0
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 1.6e-39 166.8 169 58.0
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 2.1e-39 166.4 178 55.1
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.6e-39 165.6 130 64.6
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 3.6e-39 165.6 143 64.3
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 4.7e-39 165.2 172 59.9
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 1.1e-38 164.1 190 54.2
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 1.1e-38 164.1 190 54.2
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 1.8e-38 163.3 190 53.2
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 8.9e-38 161.0 194 52.6
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.5e-37 160.2 164 57.3
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 1.3e-36 157.1 180 51.1
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 1.1e-35 154.1 159 53.5
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 9.2e-35 151.0 189 52.4
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 1.7e-33 146.7 203 48.3
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 1.1e-32 144.1 118 62.7
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 2.1e-31 139.8 89 70.8
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 1.2e-29 134.0 90 72.2
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 3.4e-29 132.5 132 51.5
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 9.9e-29 131.0 182 43.4
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 2.2e-28 129.8 142 59.9
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 2.9e-28 129.4 195 47.7
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 1.9e-27 126.7 132 50.0
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 3.2e-27 125.9 130 58.5
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 6.6e-25 118.2 154 51.3
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 1.8e-22 110.2 128 45.3
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 2.0e-21 106.7 193 40.9
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 3.8e-20 102.4 160 43.8
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 1.5e-16 90.5 128 50.8
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 3.4e-13 79.3 120 41.7
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 2.2e-12 76.6 114 43.0
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 5.4e-11 72.0 108 43.5
Lsat_1_v5_gn_7_115640 Lactuca sativa HOM05D018034 ORTHO05D006583 7.4e-08 61.6 104 45.2
Lsat_1_v5_gn_4_144040 Lactuca sativa HOM05D018034 ORTHO05D019256 4.0e-06 55.8 71 53.5
Lsat_1_v5_gn_5_57621 Lactuca sativa HOM05D018034 ORTHO05D019256 4.0e-06 55.8 71 53.5


User provided reference genes

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