Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.8e-235 817.4 398 100.0
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.2e-227 792.0 414 94.9
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.3e-203 710.3 535 72.5
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.4e-189 666.4 415 81.4
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-182 640.6 446 75.8
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.7e-161 572.4 418 70.8
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 9.1e-149 530.8 398 68.8
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.0e-148 529.6 298 89.6
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 7.7e-148 527.7 412 65.3
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.4e-146 523.5 410 66.1
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.1e-143 513.8 405 63.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 3.7e-142 508.8 400 66.5
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.9e-139 499.2 404 64.1
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.8e-139 498.8 414 64.5
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.8e-139 498.8 380 66.1
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 4.2e-138 495.4 412 62.1
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.5e-138 495.0 382 66.0
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.7e-137 492.7 399 63.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.3e-136 489.6 406 61.1
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.7e-135 485.0 412 60.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.8e-134 482.6 374 65.0
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.7e-134 482.3 434 58.5
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.1e-133 479.2 381 63.5
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.1e-133 478.8 412 59.5
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 8.0e-129 464.5 405 58.5
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.0e-128 462.2 382 63.1
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 8.8e-128 461.1 372 62.9
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 5.7e-127 458.4 374 61.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 4.8e-126 455.3 412 57.5
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 8.3e-126 454.5 374 61.5
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.1e-125 454.1 373 61.9
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.4e-125 453.0 398 59.0
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.1e-125 452.6 413 57.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 4.1e-125 452.2 401 57.4
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.3e-123 447.2 397 58.2
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.2e-122 442.6 374 61.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 5.5e-122 441.8 375 61.3
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.6e-121 440.3 403 58.3
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.6e-121 439.1 393 57.8
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 6.1e-121 438.3 394 58.1
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 6.1e-121 438.3 387 59.2
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.4e-120 437.2 408 55.9
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.8e-120 436.8 391 59.6
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 5.2e-120 435.3 408 55.6
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 5.2e-120 435.3 404 56.4
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 6.8e-120 434.9 402 58.2
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.5e-119 433.7 385 57.7
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.0e-119 433.3 403 56.3
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.6e-119 433.0 393 58.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.4e-119 432.2 414 55.1
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 5.7e-119 431.8 404 57.4
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 5.7e-119 431.8 404 54.7
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.7e-119 431.8 372 58.9
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 2.8e-118 429.5 387 57.9
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 3.7e-118 429.1 386 57.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.7e-118 429.1 371 57.4
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 3.7e-118 429.1 371 57.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 3.7e-118 429.1 392 55.6
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 4.8e-118 428.7 396 57.3
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 4.8e-118 428.7 390 56.9
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 6.3e-118 428.3 377 57.3
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 8.3e-118 427.9 400 56.5
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 8.3e-118 427.9 376 58.0
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 8.3e-118 427.9 377 57.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.1e-117 427.6 373 59.5
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.4e-117 427.2 373 58.2
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.4e-117 427.2 392 55.1
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.4e-117 427.2 374 56.7
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.8e-117 426.8 392 57.1
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 2.4e-117 426.4 371 58.5
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.4e-117 426.4 390 57.2
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.4e-117 426.4 390 57.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 3.1e-117 426.0 374 58.0
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.1e-117 426.0 399 56.4
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.1e-117 425.6 378 59.3
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 5.4e-117 425.2 387 57.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.2e-116 424.1 390 56.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.2e-116 424.1 431 55.0
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.6e-116 423.7 403 53.8
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-116 423.7 391 56.3
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.7e-116 422.9 394 57.9
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 4.5e-116 422.2 392 54.3
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.9e-116 421.8 372 57.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.3e-115 419.9 373 56.3
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.9e-115 419.5 372 57.8
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 5.0e-115 418.7 402 55.7
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.6e-115 418.3 392 54.1
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 6.6e-115 418.3 409 53.3
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 8.6e-115 417.9 403 54.8
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.5e-114 417.2 413 55.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.9e-114 416.8 410 54.4
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.5e-114 416.4 407 52.1
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 9.5e-114 414.5 393 54.7
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 9.5e-114 414.5 572 43.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.1e-113 413.3 392 55.9
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.1e-113 413.3 392 55.9
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.6e-113 412.5 403 53.6
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.8e-112 410.2 379 54.9
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 3.0e-112 409.5 359 59.9
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.0e-112 409.1 355 64.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 5.2e-112 408.7 365 57.0
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-111 407.1 403 52.1
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.6e-111 406.4 388 58.0
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 9.8e-111 404.4 412 54.6
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 9.8e-111 404.4 403 54.6
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.7e-110 403.7 378 56.1
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 4.1e-109 399.1 373 55.5
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 2.7e-108 396.4 379 55.1
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.3e-107 393.3 390 57.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.2e-105 387.5 427 49.9
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.6e-105 387.1 355 56.6
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.6e-105 386.0 377 52.5
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 8.0e-105 384.8 368 56.0
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.2e-103 380.9 272 68.4
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 7.0e-101 371.7 338 56.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.0e-100 368.6 409 52.8
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.0e-99 367.9 299 63.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.9e-99 365.9 440 46.1
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 3.6e-97 359.4 377 51.7
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.6e-95 353.2 419 46.3
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.2e-94 350.1 376 52.9
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 3.2e-93 346.3 415 48.0
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 9.2e-93 344.7 376 51.3
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.3e-91 340.9 391 48.1
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.1e-91 339.0 370 48.9
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 4.0e-88 329.3 286 60.8
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 6.8e-88 328.6 339 51.0
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 9.9e-87 324.7 397 47.6
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.4e-85 320.1 378 47.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.4e-85 320.1 277 59.6
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 3.9e-83 312.8 281 59.1
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-82 310.8 419 43.2
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 4.6e-76 289.3 237 60.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.9e-75 286.2 389 41.1
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.5e-74 284.3 396 40.9
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.4e-70 268.5 336 45.2
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 2.7e-68 263.5 408 40.9
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 6.6e-67 258.8 243 53.9
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 3.3e-66 256.5 381 40.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.9e-59 233.0 201 60.2
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.3e-57 228.0 558 31.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 3.7e-57 226.5 191 58.6
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.1e-56 224.9 322 40.4
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 3.7e-49 199.9 262 44.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 8.2e-49 198.7 224 46.0
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.4e-37 161.4 159 57.9
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.1e-34 151.8 160 53.8
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.1e-29 135.2 317 29.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.9e-29 134.4 393 28.2
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.1e-26 125.2 96 62.5
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.6e-23 114.0 81 66.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.3e-22 111.7 56 89.3
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 3.0e-19 100.5 317 25.9
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.8e-17 94.0 116 44.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.3e-14 85.1 92 47.8
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.1e-12 77.8 135 37.0
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.0e-11 75.5 89 48.3
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.2e-07 62.0 35 71.4
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 3.8e-06 57.0 72 47.2


User provided reference genes

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