Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.9e-113 411.8 252 100.0
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.8e-110 402.9 252 98.0
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 4.0e-110 401.7 252 98.0
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.0e-109 399.4 252 98.0
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.9e-104 382.9 250 94.8
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 7.4e-96 354.4 225 96.4
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 7.7e-77 291.2 244 64.3
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.7e-76 290.0 232 84.1
FAN10G2891 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-52 209.9 161 93.2
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.7e-44 183.7 243 45.7
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.5e-43 180.6 235 44.7
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 4.0e-41 172.6 238 46.2
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.0e-40 170.2 243 42.8
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 4.4e-40 169.1 242 44.6
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 6.3e-39 165.2 237 43.5
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.2e-37 161.0 239 43.1
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.2e-37 161.0 207 45.4
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.2e-37 161.0 236 42.8
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.0e-37 160.2 99 71.7
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 3.5e-37 159.5 235 41.3
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 4.5e-37 159.1 232 44.0
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 5.9e-37 158.7 113 67.3
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 7.7e-37 158.3 239 41.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.3e-36 157.5 206 42.7
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.3e-36 156.8 235 41.3
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.9e-36 156.4 94 73.4
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 6.6e-36 155.2 232 44.0
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.5e-35 154.1 242 41.7
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 1.9e-35 153.7 236 41.1
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 4.2e-35 152.5 234 42.3
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 7.2e-35 151.8 99 69.7
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 7.2e-35 151.8 99 69.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.2e-34 151.0 204 41.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.6e-34 150.6 234 41.0
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.6e-34 150.6 121 62.8
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.6e-34 150.6 107 68.2
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 2.1e-34 150.2 235 40.4
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.1e-34 150.2 99 71.7
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.1e-34 150.2 98 72.4
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 2.1e-34 150.2 242 41.3
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 2.8e-34 149.8 234 39.7
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 2.8e-34 149.8 109 62.4
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 3.6e-34 149.4 99 69.7
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 3.6e-34 149.4 231 41.1
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 4.7e-34 149.1 108 64.8
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 6.1e-34 148.7 100 70.0
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 8.0e-34 148.3 98 69.4
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 8.0e-34 148.3 99 68.7
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 8.0e-34 148.3 92 75.0
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 8.0e-34 148.3 107 63.6
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 8.0e-34 148.3 112 64.3
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.0e-33 147.9 232 39.7
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-33 147.9 102 66.7
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-33 147.9 102 66.7
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.0e-33 147.9 102 66.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 1.0e-33 147.9 104 62.5
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.4e-33 147.5 99 68.7
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.4e-33 147.5 99 68.7
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.8e-33 147.1 98 69.4
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 1.8e-33 147.1 99 66.7
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.8e-33 147.1 99 67.7
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 2.3e-33 146.7 99 69.7
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.3e-33 146.7 101 67.3
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 4.0e-33 146.0 92 73.9
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 4.0e-33 146.0 109 63.3
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 4.0e-33 146.0 99 66.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 6.8e-33 145.2 98 69.4
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 8.9e-33 144.8 91 72.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.2e-32 144.4 105 61.9
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 2.0e-32 143.7 99 67.7
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 2.0e-32 143.7 101 66.3
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.6e-32 143.3 106 63.2
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 2.6e-32 143.3 90 72.2
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.6e-32 143.3 99 68.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 2.6e-32 143.3 99 65.7
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.6e-32 143.3 107 59.8
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 2.6e-32 143.3 108 62.0
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.4e-32 142.9 99 64.6
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 4.4e-32 142.5 241 38.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 5.7e-32 142.1 111 60.4
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 5.7e-32 142.1 107 64.5
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 7.5e-32 141.7 94 69.1
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 7.5e-32 141.7 91 71.4
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 3.7e-31 139.4 94 68.1
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 3.7e-31 139.4 98 65.3
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 3.7e-31 139.4 96 65.6
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 4.9e-31 139.0 238 39.5
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 4.9e-31 139.0 98 63.3
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 1.1e-30 137.9 96 66.7
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 2.4e-30 136.7 112 58.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.4e-30 136.7 98 65.3
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 5.4e-30 135.6 103 59.2
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 5.4e-30 135.6 103 59.2
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 5.4e-30 135.6 103 59.2
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 9.2e-30 134.8 92 68.5
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 1.2e-29 134.4 96 62.5
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 1.2e-29 134.4 96 62.5
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.2e-29 134.4 96 62.5
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 1.2e-29 134.4 96 62.5
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.6e-29 134.0 107 57.9
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 1.6e-29 134.0 91 62.6
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.7e-29 133.3 97 63.9
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.7e-29 133.3 96 63.5
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.7e-29 133.3 94 63.8
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 2.7e-29 133.3 96 61.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.5e-29 132.9 92 67.4
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 3.5e-29 132.9 103 57.3
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 3.5e-29 132.9 93 67.7
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 4.5e-29 132.5 103 57.3
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 5.9e-29 132.1 96 64.6
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.8e-29 131.7 91 68.1
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 6.6e-28 128.6 91 65.9
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.3e-27 126.3 81 72.8
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 5.6e-27 125.6 219 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.8e-26 123.2 105 55.2
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 4.7e-26 122.5 100 56.0
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 8.3e-23 111.7 91 52.7
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 1.4e-22 110.9 89 55.1
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 4.1e-22 109.4 74 66.2
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 2.7e-21 106.7 86 53.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.1e-19 101.3 72 58.3
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.2e-18 97.8 107 43.9
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.4e-16 89.4 103 48.5
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 5.8e-16 89.0 95 43.2
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 9.8e-16 88.2 96 46.9
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.4e-15 85.5 91 49.5
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 5.1e-12 75.9 57 57.9
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-11 74.3 96 44.8
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 3.3e-11 73.2 49 59.2
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 7.3e-11 72.0 63 55.6
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.1e-10 70.5 70 44.3
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 8.9e-09 65.1 46 65.2
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 8.9e-09 65.1 75 38.7
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.2e-08 64.7 63 54.0
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 1.2e-08 64.7 81 38.3
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.4e-08 63.2 78 35.9
HanXRQChr11g0335291 Helianthus annuus HOM05D002826 ORTHO05D003105 1.3e-07 61.2 85 35.3
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 1.7e-07 60.8 74 37.8
Lsat_1_v5_gn_4_20381 Lactuca sativa HOM05D002826 ORTHO05D003105 1.7e-07 60.8 75 38.7
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.7e-07 60.8 89 37.1
Actinidia30164 Actinidia chinensis HOM05D000508 ORTHO05D000371 2.2e-07 60.5 67 43.3
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 2.2e-07 60.5 85 35.3
Nitab4.5_0010558g0030 Nicotiana tabacum HOM05D002826 ORTHO05D003105 2.2e-07 60.5 67 41.8
SalBow8G2187 Salvia bowleyana HOM05D002826 ORTHO05D003105 2.9e-07 60.1 72 36.1
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 4.9e-07 59.3 74 36.5
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 4.9e-07 59.3 74 36.5
Cc11_g10940 Coffea canephora HOM05D002826 ORTHO05D003105 6.4e-07 58.9 62 41.9
Peaxi162Scf00198g00412 Petunia axillaris HOM05D002826 ORTHO05D003105 6.4e-07 58.9 67 38.8
RcHm_v2.0_Chr4g0436371 Rosa chinensis HOM05D002826 ORTHO05D003105 6.4e-07 58.9 83 37.3
Solyc05g010070.3 Solanum lycopersicum HOM05D002826 ORTHO05D003105 6.4e-07 58.9 67 38.8
PGSC0003DMG400025127 Solanum tuberosum HOM05D000508 ORTHO05D000371 6.4e-07 58.9 67 38.8
CAN.G184.64 Capsicum annuum HOM05D002826 ORTHO05D003105 8.3e-07 58.5 60 43.3
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 8.3e-07 58.5 59 44.1
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.3e-07 58.5 90 38.9
MD13G1049900 Malus domestica HOM05D002826 ORTHO05D003105 8.3e-07 58.5 61 39.3
Manes.14G095500 Manihot esculenta HOM05D002826 ORTHO05D003105 8.3e-07 58.5 80 36.2
FvH4_4g28420 Fragaria vesca HOM05D002826 ORTHO05D003105 1.1e-06 58.2 67 38.8
FAN07G1210 Fragaria x ananassa HOM05D002826 ORTHO05D003105 1.1e-06 58.2 67 38.8
FAN12G4176 Fragaria x ananassa HOM05D002826 ORTHO05D003105 1.1e-06 58.2 67 38.8
Medtr4g045783 Medicago truncatula HOM05D002826 ORTHO05D003105 1.1e-06 58.2 74 35.1
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 1.1e-06 58.2 69 37.7
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 1.4e-06 57.8 60 40.0
AagrBONN_evm.TU.Sc2ySwM_369.238 Anthoceros agrestis HOM05D002826 ORTHO05D003105 2.4e-06 57.0 61 39.3
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 2.4e-06 57.0 54 42.6
TPR.G2677 Trifolium pratense HOM05D002826 ORTHO05D003105 2.4e-06 57.0 62 40.3
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 3.2e-06 56.6 62 40.3
ATR0743G230 Amborella trichopoda HOM05D002826 ORTHO05D003105 4.1e-06 56.2 62 40.3
Mapoly0005s0251 Marchantia polymorpha HOM05D002826 ORTHO05D003105 4.1e-06 56.2 54 40.7
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 4.1e-06 56.2 62 40.3
TWI75G1715 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 7.1e-06 55.5 73 37.0
Sopen05g005870 Solanum pennellii HOM05D002826 ORTHO05D003105 9.2e-06 55.1 54 40.7


User provided reference genes

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