Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.0e-268 927.9 463 100.0
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.0e-268 927.9 463 100.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.8e-264 913.7 463 97.8
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.8e-264 913.7 463 97.8
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 8.3e-263 909.8 463 97.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 2.7e-261 904.8 460 97.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.0e-260 901.4 463 97.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.6e-242 842.4 459 91.1
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.2e-221 773.1 461 83.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.1e-217 758.1 451 82.7
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.6e-216 755.4 461 81.1
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.3e-212 742.3 451 81.4
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.8e-210 734.6 457 79.9
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.2e-208 729.9 460 78.5
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 6.5e-207 724.2 451 78.5
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 8.5e-207 723.8 451 77.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 8.5e-207 723.8 461 76.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.4e-206 723.0 453 78.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.4e-206 723.0 461 75.9
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.4e-206 723.0 450 77.8
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.9e-206 722.6 458 76.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.2e-206 721.8 451 78.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 4.2e-206 721.5 454 77.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.2e-206 721.5 445 78.7
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 4.2e-206 721.5 450 77.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.1e-205 719.2 450 78.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.0e-204 716.8 446 77.8
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.8e-204 716.1 437 79.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.8e-204 716.1 457 76.6
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.3e-204 715.7 434 80.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 3.0e-204 715.3 449 78.0
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 8.8e-204 713.8 460 74.8
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.4e-203 711.4 457 75.9
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.2e-202 709.1 458 74.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.7e-202 708.4 450 76.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 8.2e-202 707.2 453 74.8
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 8.2e-202 707.2 453 76.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 3.1e-201 705.3 451 76.1
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.1e-201 704.9 450 76.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.1e-201 704.9 439 78.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 7.0e-201 704.1 462 75.5
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-200 703.4 450 76.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.2e-200 703.4 450 76.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-200 702.6 434 78.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.0e-200 702.6 451 76.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.5e-200 701.8 452 74.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.5e-200 701.8 455 76.0
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 4.5e-200 701.4 433 78.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.5e-200 701.4 439 77.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 5.9e-200 701.0 457 73.1
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.7e-199 699.5 450 75.6
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.9e-199 698.7 447 75.8
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.8e-199 698.4 434 78.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.8e-199 698.4 455 75.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 8.5e-199 697.2 460 74.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.5e-199 697.2 452 75.0
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 8.5e-199 697.2 425 77.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-198 696.4 443 76.1
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-198 695.7 444 76.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.2e-198 695.3 450 74.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.2e-198 695.3 457 75.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.2e-198 695.3 450 75.6
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.2e-198 695.3 450 75.6
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 5.5e-198 694.5 485 71.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.2e-197 693.3 433 76.4
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.2e-197 693.3 435 77.0
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.6e-197 693.0 459 75.2
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.6e-197 693.0 466 74.0
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.7e-197 691.4 445 75.3
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.0e-196 690.3 442 74.0
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.4e-196 689.9 441 75.3
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.4e-196 689.9 464 74.1
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.3e-196 689.1 442 75.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 4.0e-196 688.3 459 74.5
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 6.7e-196 687.6 432 76.4
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 6.7e-196 687.6 442 75.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 8.8e-196 687.2 442 75.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 8.8e-196 687.2 461 74.2
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-195 686.8 460 74.3
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.1e-195 686.8 453 73.5
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-195 686.8 441 77.3
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.1e-195 686.8 456 74.3
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.1e-195 686.8 443 75.6
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.5e-195 686.4 449 75.1
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.6e-195 685.6 457 75.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.4e-195 684.9 452 74.6
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 7.5e-195 684.1 446 75.3
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 9.7e-195 683.7 439 75.2
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.3e-194 683.3 428 76.4
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.8e-194 682.2 460 74.3
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.8e-194 682.2 443 75.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.8e-193 679.5 426 77.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.8e-193 679.5 452 74.1
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.6e-192 676.4 450 73.8
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.6e-192 675.6 460 73.0
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.5e-192 674.9 444 73.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 7.7e-192 674.1 439 74.3
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.2e-191 672.5 465 70.8
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 3.2e-190 668.7 427 75.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 3.2e-190 668.7 452 72.3
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.2e-190 668.3 443 75.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.2e-190 667.5 451 72.3
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.2e-189 666.8 445 73.5
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.7e-189 665.6 415 77.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 6.1e-189 664.5 440 72.0
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 8.0e-189 664.1 446 74.0
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.0e-188 663.7 464 72.0
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.8e-188 662.9 450 72.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.0e-187 659.4 437 71.6
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.4e-187 658.7 440 71.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.4e-187 658.7 440 71.1
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.4e-187 658.3 439 72.4
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 7.5e-187 657.5 433 72.1
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 9.8e-187 657.1 459 69.3
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.2e-186 656.0 438 71.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.3e-186 654.4 406 77.8
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 6.3e-186 654.4 411 77.1
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.4e-185 652.5 445 71.0
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 7.0e-185 651.0 436 72.9
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.2e-184 650.2 443 70.7
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-184 650.2 441 72.6
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.7e-184 649.0 406 77.3
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.5e-184 648.7 434 71.7
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 5.9e-184 647.9 434 71.4
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 7.7e-184 647.5 434 71.4
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 7.7e-184 647.5 436 72.5
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.2e-183 646.0 434 71.2
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 5.5e-182 641.3 438 71.5
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 9.4e-182 640.6 429 70.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.1e-181 637.9 448 68.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.2e-178 629.4 444 69.4
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 4.9e-178 628.2 449 68.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.8e-177 626.3 389 77.6
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.4e-177 624.8 439 70.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 7.7e-176 620.9 444 68.0
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-174 617.1 364 80.8
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.5e-174 615.9 370 79.5
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.3e-174 614.4 441 65.8
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-170 603.2 383 75.5
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.9e-170 601.7 441 68.3
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 7.0e-169 597.8 384 75.0
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-168 596.7 380 78.4
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.0e-164 583.9 375 75.7
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.1e-156 557.4 450 64.7
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.2e-147 527.3 440 60.9
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.1e-144 516.5 430 61.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.2e-141 507.3 438 60.5
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-137 493.8 429 58.7
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.9e-134 483.4 418 56.9
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 9.9e-131 471.1 425 57.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.7e-120 436.4 306 67.3
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.1e-117 426.8 282 73.8
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.7e-114 417.2 438 49.8
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 8.7e-111 404.8 236 80.5
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.5e-105 385.6 231 80.1
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 8.7e-103 378.3 434 45.9
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.3e-101 372.1 272 68.4
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.1e-96 357.1 423 47.0
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.4e-92 343.6 376 46.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.5e-75 286.6 280 56.8
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 8.3e-69 265.4 165 77.6
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.0e-55 221.9 151 74.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-45 187.6 113 76.1
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-38 165.2 95 80.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.5e-38 164.9 432 29.6
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.4e-38 163.3 126 62.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.2e-35 155.2 456 29.2
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.8e-24 117.5 84 63.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.5e-22 111.7 109 56.9
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.4e-15 87.8 60 68.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.2e-13 81.3 79 55.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.1e-08 62.8 199 27.1
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.1e-07 62.4 229 24.9
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.1e-07 62.4 193 28.5
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.9e-07 59.7 144 28.5
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 9.0e-07 59.3 196 26.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 9.0e-07 59.3 392 23.2
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.2e-06 58.9 144 28.5
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.5e-06 58.5 197 24.4
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-06 58.2 107 26.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.6e-06 57.8 197 24.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.8e-06 56.6 43 62.8
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 5.8e-06 56.6 139 28.8
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.6e-06 56.2 150 28.7


User provided reference genes

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