Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 0.0e+00 1218.8 608 100.0
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 0.0e+00 1086.2 594 92.9
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 0.0e+00 1082.8 594 92.8
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 0.0e+00 1081.6 594 92.6
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-309 1063.9 594 91.9
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.6e-307 1057.0 583 92.6
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 5.6e-299 1030.4 594 88.6
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.4e-280 967.6 608 84.2
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 1.6e-253 879.4 594 76.4
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.6e-250 869.4 593 75.5
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 3.9e-220 768.5 621 66.2
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.2e-207 726.1 630 61.3
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 4.8e-202 708.4 603 63.2
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 1.1e-201 707.2 620 61.6
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 1.1e-201 707.2 611 62.2
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 7.0e-201 704.5 620 61.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.0e-200 703.0 603 62.4
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.7e-200 702.6 614 61.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 1.0e-199 700.7 621 60.9
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 6.5e-199 698.0 619 61.9
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.5e-198 696.0 621 61.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 3.2e-198 695.7 614 60.4
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 4.7e-197 691.8 622 60.8
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 5.2e-196 688.3 617 59.2
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 8.8e-196 687.6 630 58.7
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 3.4e-195 685.6 623 60.2
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 5.7e-195 684.9 599 60.3
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 2.2e-194 682.9 599 58.3
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 3.7e-194 682.2 528 68.0
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 6.3e-194 681.4 621 59.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.1e-193 679.1 609 59.1
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 9.2e-193 677.6 617 59.8
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 9.2e-193 677.6 620 58.5
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 9.2e-193 677.6 605 59.3
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.0e-191 674.1 615 58.0
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.3e-191 672.9 598 60.4
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 5.0e-191 671.8 625 58.6
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.5e-190 670.2 607 59.1
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 4.7e-189 665.2 597 59.1
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 4.7e-189 665.2 599 60.4
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 6.1e-189 664.8 610 59.0
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.4e-188 663.7 599 60.9
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.4e-188 663.7 510 67.5
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.8e-188 663.3 602 59.6
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 8.9e-188 661.0 599 58.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.2e-187 660.6 594 59.3
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 4.4e-187 658.7 615 56.6
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 4.9e-186 655.2 599 60.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.1e-185 654.1 617 58.2
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.4e-185 653.7 592 57.9
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 2.4e-185 652.9 609 58.8
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 2.4e-185 652.9 497 67.2
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 4.1e-185 652.1 594 59.8
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 9.2e-185 651.0 600 59.3
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.2e-184 650.6 597 59.5
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.0e-184 649.8 615 57.1
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 3.5e-184 649.0 612 56.5
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 4.6e-184 648.7 617 57.7
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.3e-183 646.4 613 57.7
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.3e-183 646.4 491 67.8
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 3.0e-183 646.0 601 58.1
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 3.9e-183 645.6 603 59.2
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 6.6e-183 644.8 604 57.6
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.9e-182 643.3 607 58.2
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.9e-182 643.3 601 58.2
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.5e-182 642.9 601 57.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 3.3e-182 642.5 594 57.9
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 4.3e-182 642.1 601 58.1
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 9.5e-182 641.0 606 57.8
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 9.5e-182 641.0 594 58.8
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.2e-181 640.6 607 54.9
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.6e-181 640.2 609 58.5
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 8.9e-180 634.4 509 63.9
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 4.4e-179 632.1 607 57.5
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.7e-178 629.0 640 55.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.9e-177 626.7 505 66.3
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 6.0e-176 621.7 642 53.4
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 4.7e-173 612.1 592 54.9
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 3.4e-171 605.9 647 52.2
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.1e-169 600.9 621 53.9
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 3.0e-167 592.8 526 60.3
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 5.1e-167 592.0 532 59.2
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.6e-165 587.0 541 58.2
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.5e-163 580.5 596 53.5
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 7.6e-163 578.2 603 52.9
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 7.6e-163 578.2 377 80.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.0e-159 567.8 434 68.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 1.7e-159 567.0 617 54.1
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.2e-157 560.8 609 52.9
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 6.4e-154 548.5 434 64.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 6.4e-154 548.5 477 60.8
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 4.6e-152 542.3 460 57.6
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 5.1e-151 538.9 484 60.3
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 4.3e-150 535.8 613 48.5
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-150 535.8 466 56.9
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 3.4e-147 526.2 388 66.0
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 7.6e-147 525.0 501 56.9
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 2.7e-128 463.4 627 46.3
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.8e-125 453.4 382 62.3
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 6.1e-120 435.6 501 46.7
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.5e-115 421.0 439 50.6
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 9.4e-113 411.8 368 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.3e-109 401.4 552 43.1
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 5.9e-107 392.5 518 47.5
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.2e-99 368.2 405 48.4
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 5.0e-98 362.8 471 42.7
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 1.5e-97 361.3 294 64.6
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-91 340.1 185 91.4
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-91 340.1 185 91.4
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.0e-87 328.6 323 55.1
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-82 312.0 163 94.5
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-82 312.0 163 94.5
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 3.5e-67 260.4 214 62.1
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 7.8e-67 259.2 213 58.2
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-66 258.5 328 43.3
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 3.7e-61 240.4 257 58.0
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 9.2e-60 235.7 388 36.1
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.5e-57 228.4 174 63.2
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-57 227.3 185 67.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.3e-57 226.9 197 59.9
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 4.0e-55 220.3 228 49.6
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 3.4e-54 217.2 154 64.9
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-49 199.1 163 67.5
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.2e-46 192.2 218 52.3
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.4e-44 185.3 89 94.4
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 9.6e-41 172.6 164 50.0
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 1.8e-39 168.3 232 42.7
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 3.8e-37 160.6 494 28.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.1e-35 154.8 115 63.5
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 8.7e-34 149.4 225 37.8
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 2.1e-32 144.8 364 28.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 9.9e-30 136.0 136 57.4
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.2e-28 130.6 131 46.6
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.8e-26 125.2 163 47.9
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-23 115.5 105 61.0
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 5.3e-23 113.6 93 67.7
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 5.8e-22 110.2 173 35.3
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 3.9e-18 97.4 117 41.9
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 6.7e-18 96.7 162 42.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.7e-16 90.9 107 58.9
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 4.8e-16 90.5 45 86.7
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-14 84.3 163 31.9
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 4.9e-13 80.5 101 38.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 2.3e-10 71.6 86 40.7
RcHm_v2.0_Chr2g0085031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.8e-07 62.0 46 71.7
RcHm_v2.0_Chr2g0113271 Rosa chinensis HOM05D002465 ORTHO05D050744 1.5e-06 58.9 41 68.3
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 4.5e-06 57.4 102 32.4
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 4.5e-06 57.4 58 55.2
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 5.9e-06 57.0 65 50.8


User provided reference genes

Program Settings