Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-138 496.1 247 100.0
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.5e-135 485.0 247 97.6
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-121 440.3 247 89.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 3.8e-121 438.3 247 89.5
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-120 436.8 247 89.5
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 5.1e-118 427.9 249 87.6
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-117 425.6 249 87.1
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.3e-117 424.9 249 86.3
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.1e-101 373.6 249 74.7
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.4e-99 366.7 249 73.9
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.8e-99 366.3 234 74.8
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.8e-99 366.3 234 74.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 7.0e-99 364.4 247 74.5
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.7e-97 359.8 234 75.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.9e-97 359.0 249 73.9
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.8e-97 358.6 234 74.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.0e-97 358.2 249 71.5
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 6.5e-97 357.8 249 71.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.5e-97 357.8 249 71.5
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 8.5e-97 357.5 234 73.5
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-96 357.1 234 73.5
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-96 357.1 234 73.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.9e-96 356.3 234 73.5
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.9e-96 356.3 236 75.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.2e-96 354.4 249 71.5
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-95 353.6 251 75.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-95 353.6 251 75.3
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.2e-95 353.6 249 71.9
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.1e-95 352.8 234 73.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.7e-95 352.4 263 69.6
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.7e-95 351.7 249 73.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.1e-95 351.3 235 72.3
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 8.0e-95 350.9 234 73.1
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.0e-94 350.5 249 70.3
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-94 350.1 251 74.5
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.4e-94 350.1 250 70.0
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.8e-94 349.7 248 71.8
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.8e-94 349.7 249 72.3
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-94 349.4 202 88.1
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 4.0e-94 348.6 248 69.4
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 5.2e-94 348.2 247 69.2
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.8e-94 347.4 235 74.0
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 8.8e-94 347.4 235 74.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.8e-94 347.4 249 69.5
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.2e-93 347.1 234 73.1
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.5e-93 346.7 234 72.6
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 9.8e-93 344.0 234 70.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.3e-92 343.6 271 66.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.3e-92 343.6 245 69.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.7e-92 343.2 245 69.0
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.2e-92 342.8 247 68.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.8e-92 342.4 252 69.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.8e-92 342.4 250 68.0
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.7e-92 342.0 234 70.5
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 6.3e-92 341.3 234 71.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.1e-91 340.5 250 70.0
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.4e-91 340.1 234 70.1
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.8e-91 339.7 235 69.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 3.1e-91 339.0 247 68.0
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.1e-91 339.0 234 71.8
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 4.1e-91 338.6 247 68.8
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.1e-91 338.6 249 68.3
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 7.0e-91 337.8 234 71.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.2e-90 337.0 248 67.7
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.5e-90 335.5 248 69.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.9e-89 332.4 248 67.3
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-89 332.4 248 67.3
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.8e-89 332.0 249 67.9
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 6.5e-89 331.3 231 70.1
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.1e-88 330.5 245 68.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.5e-88 330.1 234 66.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.5e-88 329.3 248 66.9
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.2e-88 328.9 248 67.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 4.2e-88 328.6 246 67.5
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.2e-88 328.6 249 67.5
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.5e-88 328.2 248 66.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 7.2e-88 327.8 237 67.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.1e-87 326.2 237 67.5
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.6e-87 325.5 229 69.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 4.7e-87 325.1 246 66.7
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 6.1e-87 324.7 249 66.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.4e-86 323.6 247 65.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.0e-86 322.4 244 66.4
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.0e-86 322.4 244 66.4
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 4.0e-86 322.0 236 67.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 5.2e-86 321.6 237 67.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 8.8e-86 320.9 248 66.1
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 9.8e-85 317.4 236 64.8
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 9.8e-85 317.4 234 64.5
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.3e-84 317.0 235 65.5
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-84 317.0 236 64.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.7e-84 316.6 240 64.6
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.2e-84 316.2 249 65.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.7e-84 315.5 234 67.9
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.9e-84 315.1 239 65.3
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 6.3e-84 314.7 234 63.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.3e-84 314.7 235 68.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-83 313.9 236 64.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-83 313.9 236 64.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.1e-83 313.9 234 63.2
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.4e-83 313.5 250 62.8
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.4e-83 313.5 246 63.8
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.8e-83 313.2 234 65.0
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.1e-83 312.4 236 64.0
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.1e-83 312.4 246 64.2
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 3.1e-83 312.4 249 65.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 5.4e-83 311.6 234 64.5
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 5.4e-83 311.6 234 64.5
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.1e-83 310.8 250 62.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.1e-83 310.8 234 63.7
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.0e-82 309.7 243 63.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.0e-82 309.7 250 62.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.7e-82 309.3 249 65.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.7e-82 309.3 240 65.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.0e-81 307.4 237 65.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.3e-81 307.0 239 64.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.8e-81 305.4 290 56.6
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 7.2e-80 301.2 240 62.9
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.2e-79 300.4 248 62.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.8e-78 296.6 257 60.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.2e-76 289.7 248 60.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 4.9e-76 288.5 252 61.1
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.0e-73 280.8 201 70.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.3e-73 279.6 234 64.1
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 8.6e-73 277.7 250 60.4
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.8e-71 272.7 195 68.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.7e-65 253.4 243 56.8
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.0e-65 252.7 227 55.5
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 4.3e-64 248.8 242 51.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.6e-63 246.9 249 53.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-62 243.0 177 68.9
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.9e-59 233.4 174 64.9
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.5e-58 229.2 208 60.1
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.5e-56 223.8 172 64.0
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.8e-55 219.5 160 74.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.0e-53 213.4 203 57.6
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 9.2e-51 204.5 197 55.3
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 9.2e-51 204.5 246 44.7
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 4.6e-50 202.2 255 42.7
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.3e-49 199.9 120 75.0
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.5e-48 196.4 228 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.2e-47 194.1 228 46.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.4e-43 178.7 187 52.9
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-40 171.0 149 55.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 7.6e-37 158.3 173 52.0
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.1e-35 154.5 218 40.8
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.5e-34 149.4 90 75.6
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.3e-33 147.5 85 84.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 4.3e-32 142.5 114 59.6
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.2e-31 138.7 74 94.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 8.1e-31 138.3 158 44.9
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 8.1e-31 138.3 73 95.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-30 137.5 73 95.9
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.4e-30 136.7 74 93.2
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.4e-27 127.5 241 35.7
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.2e-26 124.4 104 63.5
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.3e-24 115.9 87 69.0
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 8.4e-20 101.7 90 53.3
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 4.2e-19 99.4 140 39.3
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.3e-19 98.2 67 71.6
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.1e-18 97.1 218 29.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.5e-16 90.9 73 64.4
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.3e-16 89.4 73 65.8
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.3e-15 85.5 57 77.2
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.1e-11 74.7 262 27.5
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-11 73.6 51 74.5
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.1e-09 65.9 53 73.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.1e-08 64.7 53 69.8
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.5e-08 64.3 51 66.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.3e-08 63.2 39 69.2
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.4e-06 57.0 53 56.6


User provided reference genes

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