Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2927 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.0e-71 272.3 140 100.0
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 3.4e-66 255.0 136 94.9
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 1.9e-64 249.2 136 93.4
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 7.0e-64 247.3 133 94.0
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 7.0e-64 247.3 136 91.9
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.9e-61 239.2 136 89.7
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 9.2e-56 220.3 138 80.4
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 4.9e-49 198.0 133 73.7
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 4.9e-49 198.0 133 74.4
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 4.9e-49 198.0 133 74.4
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.9e-48 196.1 136 72.1
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 1.5e-45 186.4 136 69.9
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 1.9e-40 169.5 137 66.4
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 2.3e-38 162.5 137 67.2
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 5.1e-38 161.4 137 61.3
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 2.8e-36 155.6 137 54.7
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 1.8e-35 152.9 139 55.4
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 6.9e-35 151.0 150 52.7
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 9.0e-35 150.6 137 54.0
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.0e-34 149.4 139 54.7
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 4.9e-33 144.8 134 52.2
Dinv32437 Davidia involucrata HOM05D003932 ORTHO05D004546 3.2e-32 142.1 135 51.1
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 5.4e-32 141.4 121 54.5
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 7.1e-32 141.0 119 53.8
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 3.5e-31 138.7 124 52.4
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 7.9e-31 137.5 119 55.5
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 7.9e-31 137.5 110 61.8
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 1.0e-30 137.1 133 52.6
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 1.8e-30 136.3 116 55.2
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 5.1e-30 134.8 127 48.8
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 1.9e-29 132.9 118 55.1
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 2.5e-29 132.5 136 49.3
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 3.3e-29 132.1 115 54.8
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 4.3e-29 131.7 120 52.5
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 4.3e-29 131.7 119 53.8
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 2.1e-28 129.4 130 48.5
ClCG05G001750 Citrullus lanatus HOM05D003932 ORTHO05D004546 3.6e-28 128.6 134 53.0
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 3.6e-28 128.6 118 52.5
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 3.6e-28 128.6 130 48.5
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 3.6e-28 128.6 130 48.5
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 4.8e-28 128.3 123 51.2
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 4.8e-28 128.3 133 48.9
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 6.2e-28 127.9 121 50.4
QL08p050082 Quercus lobata HOM05D003932 ORTHO05D004546 1.1e-27 127.1 128 48.4
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 1.1e-27 127.1 136 46.3
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 1.8e-27 126.3 119 52.1
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 2.4e-27 125.9 123 51.2
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 4.0e-27 125.2 132 46.2
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 6.9e-27 124.4 121 49.6
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 9.0e-27 124.0 117 49.6
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 4.5e-26 121.7 119 50.4
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 5.8e-26 121.3 124 47.6
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 9.9e-26 120.6 119 50.4
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 1.3e-25 120.2 111 50.5
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.7e-25 119.8 124 47.6
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 2.2e-25 119.4 124 46.0
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 2.9e-25 119.0 125 48.8
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 2.9e-25 119.0 114 50.9
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 2.9e-25 119.0 138 49.3
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 4.9e-25 118.2 127 46.5
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 4.9e-25 118.2 139 48.2
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 4.9e-25 118.2 120 46.7
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 4.9e-25 118.2 120 46.7
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 6.4e-25 117.9 121 48.8
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 6.4e-25 117.9 123 47.2
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 6.4e-25 117.9 106 53.8
Phvul.008G073300 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 1.1e-24 117.1 121 47.1
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 1.4e-24 116.7 129 48.1
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 1.9e-24 116.3 114 52.6
SalBow5G2663 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.9e-24 116.3 134 45.5
SalBow5G3861 Salvia bowleyana HOM05D003932 ORTHO05D004546 1.9e-24 116.3 134 45.5
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 2.4e-24 115.9 112 47.3
EL10Ac1g00516 Beta vulgaris HOM05D003932 ORTHO05D004546 4.2e-24 115.2 114 52.6
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 4.2e-24 115.2 132 46.2
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 5.5e-24 114.8 115 49.6
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 7.1e-24 114.4 123 44.7
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 7.1e-24 114.4 113 51.3
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 9.3e-24 114.0 136 47.8
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 1.2e-23 113.6 123 46.3
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.2e-23 113.6 131 45.0
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 1.2e-23 113.6 109 48.6
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 1.6e-23 113.2 120 45.8
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 1.6e-23 113.2 120 48.3
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 1.6e-23 113.2 123 40.7
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 2.1e-23 112.8 121 49.6
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 2.7e-23 112.5 141 44.7
Psat4g153520 Pisum sativum HOM05D003932 ORTHO05D004546 2.7e-23 112.5 132 43.2
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 4.6e-23 111.7 112 44.6
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 4.6e-23 111.7 129 49.6
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 6.0e-23 111.3 131 42.0
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 6.0e-23 111.3 131 43.5
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 6.0e-23 111.3 137 43.1
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 6.0e-23 111.3 122 46.7
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 6.0e-23 111.3 121 43.8
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 7.9e-23 110.9 136 44.9
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 1.0e-22 110.5 117 47.0
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 1.8e-22 109.8 133 45.1
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 1.8e-22 109.8 116 43.1
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 1.8e-22 109.8 115 48.7
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 2.3e-22 109.4 132 41.7
Nn1g01410 Nelumbo nucifera HOM05D003932 ORTHO05D004546 3.0e-22 109.0 107 51.4
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 3.9e-22 108.6 116 44.8
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 6.7e-22 107.8 116 43.1
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 1.9e-21 106.3 116 42.2
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 4.3e-21 105.1 109 45.9
Gohir.A08G129700 Gossypium hirsutum HOM05D003932 ORTHO05D004546 5.6e-21 104.8 87 57.5
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 5.6e-21 104.8 107 48.6
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 5.6e-21 104.8 101 53.5
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 7.4e-21 104.4 134 41.0
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 9.6e-21 104.0 136 44.1
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 1.3e-20 103.6 119 45.4
Nitab4.5_0015647g0010 Nicotiana tabacum HOM05D003932 ORTHO05D004546 1.3e-20 103.6 116 44.0
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 1.3e-20 103.6 94 57.4
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 1.6e-20 103.2 103 51.5
PSO478G3215 Papaver somniferum HOM05D003932 ORTHO05D004546 1.6e-20 103.2 101 51.5
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 1.6e-20 103.2 136 44.1
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea HOM05D003932 ORTHO05D004546 2.1e-20 102.8 127 42.5
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 3.7e-20 102.1 134 44.0
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 1.4e-19 100.1 116 43.1
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 1.8e-19 99.8 97 50.5
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 2.4e-19 99.4 124 46.0
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 5.3e-19 98.2 117 43.6
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 6.9e-19 97.8 133 39.1
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 9.0e-19 97.4 113 48.7
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 9.0e-19 97.4 128 43.8
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 1.2e-18 97.1 119 39.5
PSO478G2301 Papaver somniferum HOM05D003932 ORTHO05D004546 1.2e-18 97.1 113 47.8
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 1.5e-18 96.7 136 39.7
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 1.5e-18 96.7 126 44.4
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 1.5e-18 96.7 121 42.1
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 1.5e-18 96.7 121 42.1
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 1.5e-18 96.7 121 42.1
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 1.5e-18 96.7 116 43.1
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 2.0e-18 96.3 112 44.6
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 2.0e-18 96.3 133 38.3
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 2.0e-18 96.3 114 43.0
Thhalv10006257m.g Eutrema salsugineum HOM05D003932 ORTHO05D004546 2.0e-18 96.3 112 41.1
RcHm_v2.0_Chr5g0032131 Rosa chinensis HOM05D003932 ORTHO05D004546 2.6e-18 95.9 57 86.0
unitig_22.g6806 Utricularia gibba HOM05D003932 ORTHO05D004546 3.4e-18 95.5 86 52.3
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 4.5e-18 95.1 116 39.7
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 4.5e-18 95.1 128 43.0
PSO478G2599 Papaver somniferum HOM05D003932 ORTHO05D004546 1.0e-17 94.0 132 42.4
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 2.2e-17 92.8 128 43.0
Sp5g02170 Schrenkiella parvula HOM05D003932 ORTHO05D004546 4.9e-17 91.7 111 41.4
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 6.5e-17 91.3 111 47.7
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 1.4e-16 90.1 101 45.5
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 9.3e-16 87.4 111 41.4
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 1.2e-15 87.0 95 42.1
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 1.6e-15 86.7 109 42.2
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 3.5e-15 85.5 104 45.2
SalBow5G2036 Salvia bowleyana HOM05D003932 ORTHO05D004546 3.5e-15 85.5 104 41.3
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 3.9e-14 82.0 96 44.8
ATR0757G134 Amborella trichopoda HOM05D003932 ORTHO05D004546 1.1e-13 80.5 103 39.8
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 1.9e-13 79.7 95 41.1
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 7.4e-13 77.8 51 72.5
MBI04_g04735_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 9.6e-13 77.4 114 38.6
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 1.6e-12 76.6 108 40.7
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 1.6e-12 76.6 54 68.5
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 8.2e-12 74.3 114 39.5
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 3.1e-11 72.4 110 36.4
CDE07G1632 Ceratophyllum demersum HOM05D003932 ORTHO05D004546 4.1e-11 72.0 101 37.6
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 3.4e-10 68.9 50 70.0
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 4.5e-10 68.6 49 69.4
Oeu056332.1 Olea europaea HOM05D003932 ORTHO05D004546 1.6e-07 60.1 73 35.6
vmacro20959 Vaccinium macrocarpon HOM05D003932 ORTHO05D004546 2.7e-07 59.3 42 71.4
SEGI_14275 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 4.6e-07 58.5 134 28.4
Rhsim01G0152700 Rhododendron simsii HOM05D003932 ORTHO05D004546 1.8e-06 56.6 66 42.4
SEGI_37049 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 1.8e-06 56.6 120 30.0
Zm00001eb341620 Zea mays HOM05D003932 ORTHO05D004546 1.8e-06 56.6 79 36.7


User provided reference genes

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