Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1788.9 877 100.0
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1681.4 882 94.6
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1680.2 885 94.0
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1671.8 882 93.8
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1581.6 877 89.4
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1500.3 889 86.2
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1407.1 884 78.5
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1383.2 877 77.7
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1258.4 885 70.4
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1240.3 845 72.4
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1236.9 827 73.8
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1235.3 869 69.6
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1233.8 848 71.5
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1217.6 890 69.4
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1216.8 879 68.1
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1203.7 843 70.5
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1195.6 891 67.1
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1192.9 852 69.4
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1188.7 888 67.0
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1184.9 879 67.0
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1182.5 909 65.9
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1180.6 830 69.5
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1179.5 859 68.2
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1177.9 882 67.5
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1175.2 888 65.8
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1174.8 859 67.4
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1172.5 879 67.6
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1166.0 907 66.5
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1163.3 826 67.8
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1159.8 879 66.8
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1147.1 837 67.1
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1144.8 913 63.7
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1142.5 869 65.1
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1142.1 890 64.4
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1138.6 889 64.9
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1138.6 836 66.3
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1129.8 821 66.0
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1125.5 897 62.7
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1125.2 827 66.7
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1120.5 878 63.2
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1120.1 878 63.7
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1119.4 864 63.8
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1118.6 884 62.9
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 830 64.8
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 881 63.7
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 885 63.1
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1116.7 885 63.1
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1114.0 884 62.7
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1114.0 884 62.7
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 822 65.7
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 853 66.5
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 892 62.7
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 884 62.7
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1110.5 891 62.4
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1110.5 822 66.2
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1108.6 828 65.5
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1108.6 823 66.3
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1105.5 885 62.3
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1105.1 828 65.3
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1104.7 830 64.7
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1104.7 857 64.6
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1103.6 836 64.2
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1100.9 833 65.1
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1100.9 897 62.2
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 0.0e+00 1100.9 913 63.2
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1099.7 886 61.5
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1095.5 895 62.2
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1091.6 872 62.0
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 0.0e+00 1084.7 701 74.8
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 0.0e+00 1081.6 811 66.5
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 0.0e+00 1080.5 976 57.4
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1080.1 757 69.5
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1079.3 904 59.5
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 2.0e-310 1068.9 877 63.2
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 3.8e-309 1064.7 707 74.5
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.5e-308 1062.8 890 60.7
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 5.5e-308 1060.8 890 62.2
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 1.5e-305 1052.7 882 62.4
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 2.0e-305 1052.4 853 63.0
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 1.8e-303 1045.8 846 62.2
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 3.1e-303 1045.0 835 62.5
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 1.1e-300 1036.6 824 61.3
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 1.5e-300 1036.2 813 64.0
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 1.7e-296 1022.7 770 67.9
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 1.6e-291 1006.1 842 59.4
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 7.5e-289 997.3 867 57.3
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 1.6e-286 989.6 810 59.4
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 2.3e-285 985.7 871 58.6
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 4.0e-282 974.9 896 55.5
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 2.6e-281 972.2 746 62.5
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 3.4e-281 971.8 649 70.7
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 1.1e-274 950.3 714 66.2
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 1.5e-273 946.4 920 55.3
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 1.3e-272 943.3 794 60.5
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 1.9e-255 886.3 716 64.4
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 3.3e-244 849.0 696 63.2
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 1.8e-242 843.2 830 50.7
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 1.3e-232 810.4 874 46.9
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 5.0e-224 781.9 750 52.3
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 3.2e-223 779.2 876 46.5
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.8e-202 710.3 829 48.4
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 9.8e-188 661.4 486 67.9
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 1.4e-186 657.5 573 53.8
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 5.4e-186 655.6 511 64.8
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 4.7e-158 562.8 826 39.7
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 1.9e-151 540.8 946 36.4
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 5.4e-146 522.7 553 52.6
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 8.4e-123 445.7 403 55.6
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.9e-116 422.9 304 69.4
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 2.2e-110 404.4 401 56.1
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.2e-108 398.7 303 66.7
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 3.0e-96 357.5 244 69.3
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.7e-92 344.4 246 63.4
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.2e-89 335.5 192 79.2
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.2e-89 335.5 188 80.3
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 8.0e-89 332.8 186 80.6
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 1.3e-78 298.9 432 37.5
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.6e-76 292.0 217 58.5
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 2.8e-73 281.2 203 59.1
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 3.2e-45 188.0 147 53.7
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 4.7e-41 174.1 144 51.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.8e-24 119.0 165 40.0
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 5.8e-23 114.0 242 36.8
FvH4_1g28571 Fragaria vesca HOM05D028679 ORTHO05D046132 2.5e-18 98.6 72 77.8
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 3.0e-11 75.1 109 43.1
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.1e-10 73.2 62 62.9
MD01G1156300 Malus domestica HOM05D005937 ORTHO05D248608 1.5e-10 72.8 72 63.9
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 4.3e-10 71.2 98 48.0
FAN12G0070 Fragaria x ananassa HOM05D028679 ORTHO05D046132 2.1e-09 68.9 51 76.5


User provided reference genes

Program Settings