Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 7.7e-49 196.8 99 100.0
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 2.5e-47 191.8 99 97.0
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.2e-47 191.0 99 97.0
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 9.4e-47 189.9 99 97.0
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.8e-45 183.7 99 96.0
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.8e-45 183.7 99 96.0
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 2.8e-43 178.3 99 91.9
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 4.7e-30 134.4 95 68.4
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.4e-29 132.9 97 69.1
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.5e-28 129.4 95 66.3
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 2.6e-28 128.6 95 66.3
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 9.8e-28 126.7 93 66.7
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.4e-26 122.1 93 62.4
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 4.1e-26 121.3 98 63.3
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 7.0e-26 120.6 93 62.4
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 9.2e-26 120.2 93 64.5
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 9.2e-26 120.2 98 63.3
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 2.0e-25 119.0 93 62.4
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 2.7e-25 118.6 95 63.2
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 3.5e-25 118.2 98 60.2
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 3.5e-25 118.2 98 62.2
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.5e-25 118.2 93 62.4
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 4.6e-25 117.9 97 60.8
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 7.8e-25 117.1 98 62.2
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 7.8e-25 117.1 93 61.3
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 1.3e-24 116.3 92 65.2
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 1.3e-24 116.3 93 63.4
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 1.3e-24 116.3 93 60.2
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.3e-24 116.3 98 62.2
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 1.7e-24 115.9 91 60.4
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 3.0e-24 115.2 92 63.0
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 3.9e-24 114.8 98 59.2
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 3.9e-24 114.8 93 65.6
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 8.6e-24 113.6 98 60.2
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.9e-23 112.5 98 59.2
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.5e-23 112.1 91 64.8
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 4.3e-23 111.3 93 59.1
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 5.6e-23 110.9 101 59.4
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 7.3e-23 110.5 93 58.1
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 9.5e-23 110.2 91 59.3
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 1.6e-22 109.4 98 58.2
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 1.6e-22 109.4 93 60.2
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 1.6e-22 109.4 93 58.1
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.8e-22 108.6 98 61.2
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 2.8e-22 108.6 110 53.6
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.8e-22 108.6 96 60.4
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 3.6e-22 108.2 98 57.1
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 3.6e-22 108.2 98 57.1
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 4.7e-22 107.8 95 54.7
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 6.2e-22 107.5 93 58.1
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 8.0e-22 107.1 96 58.3
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.8e-21 105.9 97 58.8
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.8e-21 105.9 98 60.2
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.8e-21 105.9 98 57.1
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 2.3e-21 105.5 97 58.8
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.3e-21 105.5 93 55.9
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 4.0e-21 104.8 98 57.1
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 4.0e-21 104.8 97 56.7
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 5.2e-21 104.4 95 56.8
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 6.8e-21 104.0 94 58.5
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 8.9e-21 103.6 97 54.6
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.2e-20 103.2 89 58.4
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.2e-20 103.2 98 56.1
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.2e-20 103.2 94 57.4
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.2e-20 103.2 98 56.1
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 2.0e-20 102.4 101 52.5
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.6e-20 102.1 93 52.7
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 3.4e-20 101.7 93 58.1
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 4.4e-20 101.3 96 55.2
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 4.4e-20 101.3 96 55.2
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 5.8e-20 100.9 91 58.2
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-19 99.8 93 57.0
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-19 99.8 93 57.0
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.3e-19 99.8 93 57.0
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.3e-19 99.8 91 57.1
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.3e-19 99.8 98 55.1
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 2.2e-19 99.0 101 50.5
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 2.2e-19 99.0 101 49.5
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.9e-19 98.6 95 55.8
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 4.9e-19 97.8 98 54.1
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 4.9e-19 97.8 96 55.2
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 6.4e-19 97.4 93 55.9
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 6.4e-19 97.4 93 55.9
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 6.4e-19 97.4 93 54.8
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 8.3e-19 97.1 86 59.3
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.4e-18 95.5 95 55.8
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 2.4e-18 95.5 101 47.5
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.2e-18 95.1 93 49.5
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.1e-18 94.7 93 55.9
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 2.0e-17 92.4 91 54.9
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 3.5e-17 91.7 98 52.0
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 4.6e-17 91.3 66 65.2
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.6e-17 91.3 92 53.3
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 7.8e-17 90.5 91 50.5
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 1.3e-16 89.7 96 53.1
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.7e-16 89.4 101 46.5
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 2.3e-16 89.0 95 50.5
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 2.3e-16 89.0 91 49.5
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 3.0e-16 88.6 66 63.6
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.9e-16 88.2 92 52.2
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 5.0e-16 87.8 98 49.0
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 1.1e-15 86.7 92 51.1
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.5e-15 86.3 93 50.5
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 1.9e-15 85.9 92 51.1
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 2.5e-15 85.5 96 47.9
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 2.5e-15 85.5 95 49.5
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 3.3e-15 85.1 92 51.1
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 3.3e-15 85.1 92 51.1
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 5.6e-15 84.3 92 50.0
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 5.6e-15 84.3 92 51.1
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 5.6e-15 84.3 92 50.0
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 5.6e-15 84.3 92 50.0
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 5.6e-15 84.3 92 51.1
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 7.3e-15 84.0 88 47.7
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 7.3e-15 84.0 86 52.3
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.2e-14 83.2 98 48.0
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 1.2e-14 83.2 96 49.0
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 2.1e-14 82.4 98 46.9
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.6e-14 81.6 90 46.7
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 4.7e-14 81.3 93 47.3
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 4.7e-14 81.3 92 50.0
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 6.2e-14 80.9 95 46.3
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.1e-13 80.1 92 48.9
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.4e-13 79.7 90 47.8
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 1.4e-13 79.7 88 51.1
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 1.8e-13 79.3 92 43.5
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 1.8e-13 79.3 76 52.6
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 2.3e-13 79.0 100 46.0
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 4.0e-13 78.2 90 46.7
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.2e-12 76.6 90 45.6
Oeu006055.1 Olea europaea HOM05D003400 ORTHO05D003687 1.5e-12 76.3 87 50.6
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 2.0e-12 75.9 95 44.2
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 2.0e-12 75.9 96 49.0
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 5.8e-12 74.3 95 43.2
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 5.8e-12 74.3 64 59.4
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 2.9e-11 72.0 96 44.8
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 2.9e-11 72.0 96 44.8
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 2.9e-11 72.0 100 44.0
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 2.9e-11 72.0 98 43.9
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 3.7e-11 71.6 98 43.9
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 3.7e-11 71.6 93 43.0
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 4.9e-11 71.2 67 50.7
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.1e-10 70.1 95 42.1
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 1.1e-10 70.1 95 41.1
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.1e-10 70.1 97 45.4
unitig_46.g18749 Utricularia gibba HOM05D003400 ORTHO05D003687 1.1e-10 70.1 91 44.0
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.4e-10 69.7 97 43.3
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 1.4e-10 69.7 95 41.1
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.9e-10 69.3 95 41.1
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.9e-10 69.3 97 43.3
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 3.2e-10 68.6 95 41.1
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 3.2e-10 68.6 95 41.1
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 4.1e-10 68.2 92 45.7
Dinv34485 Davidia involucrata HOM05D003400 ORTHO05D003687 4.1e-10 68.2 67 52.2
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 4.1e-10 68.2 95 45.3
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 5.4e-10 67.8 95 40.0
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.2e-09 66.6 83 49.4
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.6e-09 66.2 97 41.2
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 6.0e-09 64.3 89 42.7
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 7.8e-09 63.9 95 40.0
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 1.0e-08 63.5 90 37.8
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 3.0e-08 62.0 95 35.8
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 6.6e-08 60.8 105 43.8
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 3.3e-07 58.5 95 36.8


User provided reference genes

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