Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.6e-305 1052.0 551 100.0
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.8e-222 775.0 463 90.5
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.5e-218 760.8 451 90.9
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 6.6e-198 694.5 553 71.4
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.5e-197 693.3 554 71.1
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 4.6e-191 671.8 466 80.5
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 2.0e-178 629.8 551 65.5
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 1.2e-175 620.5 559 63.9
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 1.5e-173 613.6 556 62.8
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 4.3e-173 612.1 552 64.1
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 6.2e-172 608.2 549 63.6
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.4e-171 607.1 548 62.4
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 5.2e-171 605.1 563 62.0
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 5.2e-171 605.1 555 62.7
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 4.4e-170 602.1 551 62.6
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 2.7e-167 592.8 560 61.6
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-165 587.0 534 63.5
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 5.6e-165 585.1 551 61.3
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 7.3e-165 584.7 551 61.2
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 1.2e-164 583.9 544 61.6
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 2.8e-164 582.8 543 61.0
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.8e-163 580.1 551 60.6
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 3.1e-163 579.3 552 60.3
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 3.1e-163 579.3 543 61.5
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 6.9e-163 578.2 543 60.4
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 1.2e-162 577.4 549 60.8
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 7.6e-162 574.7 551 59.5
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 1.7e-161 573.5 542 61.4
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 2.2e-161 573.2 548 60.4
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 1.1e-160 570.9 541 59.0
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 1.4e-160 570.5 554 59.2
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 3.2e-160 569.3 545 58.9
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 5.4e-160 568.5 541 58.8
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 1.6e-159 567.0 549 59.7
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 2.1e-159 566.6 529 62.2
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 7.8e-159 564.7 548 59.3
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 3.0e-158 562.8 545 60.0
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 3.9e-158 562.4 561 59.2
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 5.1e-158 562.0 541 60.3
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 5.1e-158 562.0 541 60.3
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 8.7e-158 561.2 551 59.5
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 7.3e-157 558.1 596 56.2
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 1.3e-156 557.4 547 58.1
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 2.1e-156 556.6 548 59.3
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 2.8e-156 556.2 545 59.1
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 2.8e-156 556.2 563 58.3
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 3.6e-156 555.8 545 58.9
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 3.6e-156 555.8 545 59.1
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.7e-153 547.0 457 68.7
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 4.9e-153 545.4 546 59.7
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.6e-151 540.4 460 67.6
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 5.1e-150 535.4 542 56.1
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 8.7e-150 534.6 476 65.5
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 2.5e-149 533.1 578 56.1
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 4.3e-149 532.3 553 55.7
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 4.3e-149 532.3 538 58.4
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 5.6e-149 531.9 547 57.4
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 1.6e-148 530.4 541 56.9
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.1e-147 527.7 549 56.6
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 3.1e-147 526.2 550 57.1
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 3.4e-146 522.7 542 55.9
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 4.5e-146 522.3 545 55.2
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 7.6e-146 521.5 542 56.1
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 7.6e-146 521.5 542 55.9
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 8.4e-145 518.1 547 55.6
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 1.1e-144 517.7 549 55.7
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 3.9e-142 509.2 555 53.9
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.5e-141 507.3 550 56.0
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.9e-141 506.9 547 55.8
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 4.5e-138 495.7 545 53.4
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.3e-137 494.2 507 58.0
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 2.9e-137 493.0 523 55.3
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.4e-136 490.7 553 53.7
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 5.5e-136 488.8 544 54.0
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 5.7e-133 478.8 544 53.1
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.8e-132 476.5 543 53.2
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 5.3e-131 472.2 505 58.0
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 3.4e-130 469.5 429 64.3
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 6.5e-129 465.3 570 50.9
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-128 464.5 382 71.7
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 1.8e-126 457.2 562 50.7
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 2.4e-123 446.8 543 51.2
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 9.1e-123 444.9 518 53.3
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 2.0e-122 443.7 424 60.8
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 2.3e-118 430.3 516 52.7
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 1.4e-115 421.0 552 50.2
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 2.9e-105 386.7 410 54.4
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 2.6e-101 373.6 294 72.8
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.3e-100 371.3 526 47.7
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 4.7e-95 352.8 362 55.8
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 1.5e-88 331.3 314 58.9
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 9.2e-83 312.0 552 38.9
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 4.5e-82 309.7 342 55.0
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 1.2e-79 301.6 202 82.7
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 7.0e-75 285.8 434 41.5
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.5e-72 278.1 260 60.4
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.8e-70 271.2 268 57.5
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.6e-61 240.7 243 52.7
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 1.3e-60 238.4 266 59.0
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 2.1e-58 231.1 191 67.0
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 5.1e-57 226.5 242 55.0
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 2.4e-54 217.6 184 62.5
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.3e-41 175.3 103 92.2
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 6.2e-39 166.4 99 91.9
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 5.3e-38 163.3 200 47.5
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 9.9e-37 159.1 187 55.1
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 4.9e-28 130.2 134 58.2
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 5.5e-27 126.7 140 57.1
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 4.3e-24 117.1 71 81.7
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.2e-21 109.0 527 27.3
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.0e-21 108.2 164 45.1
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 5.8e-21 106.7 96 61.5
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 5.8e-21 106.7 72 83.3
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 4.9e-20 103.6 71 74.6
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 1.4e-19 102.1 90 68.9
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 4.2e-19 100.5 90 68.9
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 7.1e-19 99.8 90 67.8
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 3.7e-15 87.4 55 80.0
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 8.8e-09 66.2 49 75.5
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 2.0e-08 65.1 42 69.0
FAN05G0645 Fragaria x ananassa HOM05D001482 ORTHO05D017727 5.7e-08 63.5 43 76.7


User provided reference genes

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