Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.2e-40 169.5 91 100.0
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.5e-35 152.5 87 94.3
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 9.9e-35 149.8 87 93.1
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.9e-35 149.8 87 93.1
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.9e-35 149.8 87 93.1
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 9.9e-35 149.8 87 93.1
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 9.9e-35 149.8 87 93.1
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 1.8e-31 139.0 87 85.1
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 1.8e-31 139.0 87 85.1
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 3.3e-30 134.8 87 83.9
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 5.6e-30 134.0 82 86.6
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 1.3e-29 132.9 86 81.4
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 1.6e-29 132.5 87 81.6
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 1.6e-29 132.5 87 81.6
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 2.8e-29 131.7 82 84.1
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.8e-29 131.7 82 86.6
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.8e-29 131.7 82 86.6
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 2.8e-29 131.7 82 85.4
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 3.7e-29 131.3 87 82.8
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.7e-29 131.3 73 95.9
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 3.7e-29 131.3 87 81.6
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 4.8e-29 131.0 87 80.5
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 6.2e-29 130.6 87 81.6
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 1.8e-28 129.0 87 80.5
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 1.8e-28 129.0 87 80.5
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 3.1e-28 128.3 87 78.2
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 3.1e-28 128.3 82 82.9
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 4.0e-28 127.9 82 81.7
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 4.0e-28 127.9 87 80.5
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 4.0e-28 127.9 87 79.3
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 4.0e-28 127.9 87 78.2
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 5.3e-28 127.5 87 80.5
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 6.9e-28 127.1 87 79.3
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 6.9e-28 127.1 82 82.9
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 6.9e-28 127.1 87 78.2
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 6.9e-28 127.1 82 82.9
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 6.9e-28 127.1 87 78.2
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 9.0e-28 126.7 87 75.9
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 9.0e-28 126.7 82 82.9
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 1.2e-27 126.3 87 78.2
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 1.5e-27 125.9 87 77.0
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 1.5e-27 125.9 87 78.2
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 2.0e-27 125.6 87 78.2
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 2.0e-27 125.6 87 78.2
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 2.0e-27 125.6 87 80.5
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 2.6e-27 125.2 87 75.9
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 2.6e-27 125.2 82 81.7
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.4e-27 124.8 87 77.0
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 3.4e-27 124.8 87 75.9
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 3.4e-27 124.8 86 75.6
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 3.4e-27 124.8 82 78.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.4e-27 124.8 87 75.9
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 4.5e-27 124.4 82 80.5
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 4.5e-27 124.4 87 73.6
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 5.8e-27 124.0 82 79.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 5.8e-27 124.0 82 79.3
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 5.8e-27 124.0 82 79.3
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 5.8e-27 124.0 82 79.3
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.6e-27 123.6 86 76.7
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 7.6e-27 123.6 87 73.6
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 7.6e-27 123.6 82 78.0
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 1.0e-26 123.2 82 78.0
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 1.0e-26 123.2 82 75.6
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 1.0e-26 123.2 87 78.2
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 1.0e-26 123.2 82 80.5
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 1.0e-26 123.2 82 80.5
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 79.3
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 78.0
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 75.6
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 76.8
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 82.9
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 76.8
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.3e-26 122.9 82 79.3
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.7e-26 122.5 82 78.0
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 1.7e-26 122.5 82 78.0
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 1.7e-26 122.5 87 75.9
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 1.7e-26 122.5 87 74.7
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 1.7e-26 122.5 87 74.7
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 2.2e-26 122.1 87 74.7
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 2.2e-26 122.1 82 78.0
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 2.2e-26 122.1 87 74.7
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 2.2e-26 122.1 87 74.7
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 3.8e-26 121.3 82 76.8
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 3.8e-26 121.3 82 76.8
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 3.8e-26 121.3 87 74.7
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.8e-26 121.3 82 74.4
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 4.9e-26 120.9 82 75.6
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 4.9e-26 120.9 82 75.6
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 4.9e-26 120.9 82 75.6
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 4.9e-26 120.9 82 75.6
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 4.9e-26 120.9 87 74.7
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 4.9e-26 120.9 87 74.7
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.9e-26 120.9 83 80.7
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 6.5e-26 120.6 82 75.6
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 6.5e-26 120.6 85 74.1
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 6.5e-26 120.6 82 78.0
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 8.4e-26 120.2 82 75.6
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 8.4e-26 120.2 82 78.0
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 1.1e-25 119.8 82 78.0
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 1.1e-25 119.8 82 74.4
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.1e-25 119.8 82 78.0
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 1.4e-25 119.4 87 72.4
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.4e-25 119.4 87 70.1
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 2.5e-25 118.6 82 75.6
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 2.5e-25 118.6 87 71.3
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 3.2e-25 118.2 86 77.9
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 3.2e-25 118.2 82 79.3
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 3.2e-25 118.2 82 75.6
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 5.5e-25 117.5 82 75.6
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 1.2e-24 116.3 86 75.6
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-24 116.3 86 75.6
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-24 116.3 86 75.6
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 1.2e-24 116.3 86 75.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-24 115.5 79 73.4
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-24 115.5 79 73.4
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 2.1e-24 115.5 91 70.3
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 3.5e-24 114.8 76 78.9
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 4.6e-24 114.4 86 74.4
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 6.0e-24 114.0 81 75.3
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 6.0e-24 114.0 82 74.4
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 7.9e-24 113.6 82 73.2
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 1.8e-23 112.5 91 68.1
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 3.9e-23 111.3 86 73.3
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 3.9e-23 111.3 87 67.8
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 3.9e-23 111.3 85 67.1
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 5.1e-23 110.9 85 71.8
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 6.7e-23 110.5 76 78.9
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 6.7e-23 110.5 71 81.7
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 8.7e-23 110.2 87 64.4
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 8.7e-23 110.2 91 67.0
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 8.7e-23 110.2 91 67.0
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 8.7e-23 110.2 86 72.1
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 1.1e-22 109.8 91 65.9
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 1.1e-22 109.8 91 65.9
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 1.5e-22 109.4 91 65.9
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.5e-22 109.4 86 70.9
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.9e-22 109.0 90 66.7
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.9e-22 109.0 91 64.8
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 2.5e-22 108.6 91 65.9
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 2.5e-22 108.6 82 69.5
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 4.3e-22 107.8 91 65.9
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 5.7e-22 107.5 91 64.8
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 7.4e-22 107.1 72 80.6
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 9.7e-22 106.7 91 64.8
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 1.3e-21 106.3 86 68.6
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 1.3e-21 106.3 65 87.7
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 1.6e-21 105.9 82 65.9
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.8e-21 105.1 81 72.8
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 3.7e-21 104.8 91 61.5
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.2e-21 103.6 66 84.8
FAN02G3567 Fragaria x ananassa HOM05D004009 ORTHO05D004617 5.3e-20 100.9 72 76.4
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 6.9e-20 100.5 87 65.5
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-19 99.4 77 68.8
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.5e-19 99.4 77 68.8
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 2.6e-19 98.6 68 76.5
Eucgr.F00518 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.6e-19 98.6 82 69.5
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 2.6e-19 98.6 82 62.2
Eucgr.F00510 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.7e-18 95.9 82 68.3
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 2.9e-18 95.1 82 63.4
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 3.8e-18 94.7 64 75.0
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 1.1e-17 93.2 87 57.5
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 5.5e-17 90.9 59 83.1
Eucgr.F00521 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.2e-17 90.5 82 64.6
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.1e-16 89.0 82 62.2
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 3.9e-15 84.7 87 49.4
Eucgr.F00526 Eucalyptus grandis HOM05D004009 ORTHO05D004617 5.1e-15 84.3 59 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 6.7e-15 84.0 92 52.2
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 1.1e-14 83.2 54 77.8
MBI14_g39769_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 5.7e-14 80.9 54 74.1
CAN.G504.96 Capsicum annuum HOM05D004009 ORTHO05D004617 4.5e-11 71.2 87 54.0
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 2.1e-08 62.4 70 48.6
Mapoly0056s0039 Marchantia polymorpha HOM05D001606 ORTHO05D002266 5.7e-06 54.3 82 36.6


User provided reference genes

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