Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.7e-28 127.9 60 100.0
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 2.3e-27 124.8 60 96.7
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.3e-27 124.8 60 96.7
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 5.2e-24 113.6 60 88.3
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.9e-24 112.8 77 74.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-23 112.5 60 86.7
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.2e-23 112.5 60 86.7
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.3e-16 88.2 59 67.8
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 2.3e-16 88.2 58 67.2
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.0e-16 87.4 58 67.2
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 5.2e-16 87.0 58 63.8
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 6.8e-16 86.7 51 76.5
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 6.8e-16 86.7 60 70.0
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.5e-15 85.5 58 65.5
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.0e-15 85.1 58 62.1
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.4e-15 84.3 50 70.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.4e-15 84.3 54 66.7
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 4.4e-15 84.0 51 70.6
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 4.4e-15 84.0 53 73.6
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 9.8e-15 82.8 58 63.8
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 9.8e-15 82.8 54 64.8
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.9e-14 81.3 58 58.6
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 2.9e-14 81.3 58 60.3
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.7e-14 80.9 51 68.6
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 6.4e-14 80.1 59 66.1
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 6.4e-14 80.1 53 66.0
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 8.3e-14 79.7 57 63.2
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.1e-13 79.3 50 70.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.1e-13 79.3 58 65.5
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.1e-13 79.3 50 70.0
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.9e-13 78.6 53 67.9
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.9e-13 78.6 56 62.5
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 2.4e-13 78.2 59 62.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.2e-13 77.8 58 63.8
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.2e-13 77.8 58 63.8
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 3.2e-13 77.8 57 61.4
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.2e-13 77.8 51 66.7
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 4.1e-13 77.4 58 60.3
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 7.1e-13 76.6 49 65.3
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 7.1e-13 76.6 58 62.1
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 9.2e-13 76.3 51 66.7
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.6e-12 75.5 33 100.0
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.6e-12 75.5 53 64.2
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.5e-12 74.3 50 60.0
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 6.0e-12 73.6 58 56.9
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 2.3e-11 71.6 53 64.2
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.3e-11 71.6 51 64.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.0e-11 71.2 59 59.3
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.0e-11 71.2 59 59.3
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.0e-11 71.2 53 62.3
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 3.9e-11 70.9 55 60.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 6.6e-11 70.1 53 62.3
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-10 69.3 59 55.9
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.1e-10 69.3 50 66.0
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.9e-10 68.6 59 55.9
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-10 68.2 49 63.3
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 2.5e-10 68.2 49 63.3
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 2.5e-10 68.2 51 60.8
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 3.3e-10 67.8 58 60.3
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 3.3e-10 67.8 55 54.5
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 4.3e-10 67.4 59 57.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 4.3e-10 67.4 59 57.6
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 4.3e-10 67.4 59 50.8
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 5.6e-10 67.0 54 59.3
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 7.3e-10 66.6 57 57.9
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 7.3e-10 66.6 48 60.4
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 7.3e-10 66.6 71 49.3
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 7.3e-10 66.6 48 60.4
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 9.5e-10 66.2 58 50.0
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.2e-09 65.9 51 62.7
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-09 65.9 50 62.0
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.2e-09 65.9 50 62.0
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 50 62.0
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 4.7e-09 63.9 56 48.2
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 4.7e-09 63.9 53 56.6
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 4.7e-09 63.9 53 56.6
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 6.2e-09 63.5 58 53.4
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 8.1e-09 63.2 93 39.8
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.4e-08 62.4 48 58.3
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.8e-08 62.0 46 60.9
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 1.8e-08 62.0 48 58.3
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 3.1e-08 61.2 48 52.1
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 4.0e-08 60.8 46 60.9
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 4.0e-08 60.8 46 60.9
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 5.2e-08 60.5 46 60.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 5.2e-08 60.5 46 60.9
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 5.2e-08 60.5 48 56.2
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 8.9e-08 59.7 50 54.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.2e-07 59.3 48 52.1
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.0e-07 58.5 59 50.8
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 2.0e-07 58.5 55 54.5
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 3.4e-07 57.8 42 69.0
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 3.4e-07 57.8 48 52.1
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.8e-07 57.0 35 74.3
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 5.8e-07 57.0 60 46.7
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 7.6e-07 56.6 47 59.6
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 2.2e-06 55.1 44 61.4
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 2.9e-06 54.7 35 71.4
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 3.7e-06 54.3 48 60.4
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 3.7e-06 54.3 42 61.9
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 6.4e-06 53.5 55 56.4
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 8.4e-06 53.1 46 58.7


User provided reference genes

Program Settings