Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2510.7 1290 100.0
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 2387.1 1292 95.4
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2370.5 1290 95.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 2347.0 1290 94.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 2283.1 1304 90.3
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2111.6 1294 83.3
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 2085.5 1306 82.4
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 2078.1 1294 81.9
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1902.5 1290 76.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1882.1 1301 74.3
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1872.8 1302 74.3
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1849.3 1281 73.8
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1843.9 1293 72.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1835.8 1299 71.7
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1835.8 1300 71.8
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1833.2 1299 71.7
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1813.9 1280 73.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1810.8 1283 72.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1805.4 1296 71.8
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1801.2 1297 71.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1799.3 1297 71.2
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1794.2 1299 70.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1793.1 1301 71.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1789.6 1289 71.2
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1787.7 1288 71.2
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1786.9 1298 71.3
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1786.9 1300 71.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1782.3 1302 70.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1777.7 1287 71.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1771.9 1303 70.3
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1770.7 1291 70.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1770.0 1285 71.1
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1763.4 1289 70.1
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1762.3 1348 68.6
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1754.6 1300 70.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1754.2 1287 69.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1751.9 1282 69.7
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1749.2 1285 69.3
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1746.9 1360 67.4
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1744.6 1299 70.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1743.4 1285 69.3
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1742.2 1285 70.0
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1738.0 1289 69.2
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1731.5 1306 69.0
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1728.0 1323 68.4
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1305 69.7
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1720.7 1344 67.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1718.7 1280 68.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1718.0 1295 68.3
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1715.7 1293 68.9
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1284 69.2
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1709.5 1281 69.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1706.0 1281 68.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1705.6 1302 68.4
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1287 68.8
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1703.3 1285 67.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1697.9 1346 66.5
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1284 68.8
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1693.3 1298 67.0
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1282 67.3
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1287 68.5
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1690.2 1304 67.8
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1684.8 1300 67.4
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1681.0 1276 67.1
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1677.1 1302 67.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1675.2 1212 71.8
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1277 67.3
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1286 66.6
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1269 68.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1655.6 1341 65.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1290 66.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1300 66.9
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1280 67.0
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1282 66.4
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1641.3 1295 66.6
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1625.5 1206 69.9
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1620.1 1285 66.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1617.4 1277 66.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1617.1 1277 66.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1616.7 1284 66.0
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1285 64.7
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1210 70.1
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1579.7 1277 65.0
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1571.6 1323 62.7
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1561.2 1232 66.4
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1220 66.2
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1298 62.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1532.3 1054 74.0
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1523.5 1039 75.0
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1504.2 1191 65.5
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1480.3 1287 60.1
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1469.5 1291 61.3
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1419.8 1316 57.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1418.7 1284 58.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1412.9 1275 58.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1303.9 1064 64.8
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1201.0 1278 53.1
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1191.0 918 67.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1159.4 995 60.6
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1146.3 1294 49.0
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1122.8 917 64.8
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1118.2 980 61.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1113.2 1284 48.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.3e-310 1070.1 665 80.8
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 9.7e-301 1037.3 824 65.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 6.1e-287 991.5 1226 46.0
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 5.1e-286 988.4 844 62.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.9e-264 916.8 1264 43.7
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.4e-222 777.7 551 72.6
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 3.4e-213 746.5 1310 36.9
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 7.6e-189 665.6 633 56.9
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 5.0e-188 662.9 643 56.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 8.2e-183 645.6 479 69.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.6e-178 631.3 1427 33.1
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 4.5e-173 613.2 495 65.7
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 5.1e-169 599.7 1330 32.2
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 5.4e-150 536.6 699 46.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.9e-131 474.9 333 70.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.8e-130 471.1 1182 31.0
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 6.2e-130 469.9 276 85.1
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.5e-120 438.7 733 40.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.3e-103 382.5 248 80.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-93 349.0 272 65.4
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-93 349.0 272 65.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 6.0e-93 347.1 243 76.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 8.1e-90 336.7 200 86.5
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-88 332.8 367 50.7
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 7.6e-72 276.9 242 59.1
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.7e-58 232.6 204 61.8
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 3.2e-54 218.4 194 61.9
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.0e-51 209.1 161 68.3
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.6e-48 198.7 160 63.8
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.2e-44 184.5 104 81.7
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 4.7e-37 161.4 127 67.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.2e-32 146.7 109 69.7
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.0e-31 143.7 121 66.1
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.5e-30 139.0 612 26.5
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 4.7e-29 134.8 224 42.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.0e-19 102.8 150 41.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 4.4e-19 101.7 127 41.7
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 7.5e-19 100.9 95 54.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 4.9e-18 98.2 160 40.0
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.8e-17 96.3 118 44.1
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.2e-17 95.5 62 75.8
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.2e-16 93.6 118 42.4
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 6.6e-15 87.8 115 45.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.3e-14 85.5 92 54.3
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 7.3e-14 84.3 115 40.0
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.2e-13 83.6 117 45.3
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.6e-11 75.9 67 61.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.9e-10 71.6 66 53.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.9e-10 71.6 251 27.5
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.5e-08 65.5 156 35.3
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 5.0e-07 61.6 57 54.4
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 6.6e-07 61.2 41 73.2
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.5e-06 60.1 47 61.7


User provided reference genes

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