Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.4e-116 422.9 203 100.0
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-111 406.0 203 96.6
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.2e-99 366.7 181 96.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.2e-99 366.7 181 96.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 5.9e-96 354.4 180 92.8
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.4e-82 307.8 187 79.1
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.6e-80 303.1 190 76.3
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 6.6e-79 297.7 197 72.1
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.2e-76 288.1 185 73.5
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.2e-75 287.0 186 70.4
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.5e-75 286.6 191 71.7
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.4e-75 285.4 185 73.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 3.4e-75 285.4 194 70.1
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 5.8e-75 284.6 183 70.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.8e-75 284.6 186 73.1
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 7.5e-75 284.3 182 73.1
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.3e-74 283.5 191 70.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.9e-74 282.3 189 70.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.7e-74 282.0 184 70.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 6.4e-74 281.2 173 75.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.4e-74 281.2 189 70.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.1e-73 280.4 188 70.7
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.9e-73 279.6 187 70.1
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.9e-73 279.6 182 71.4
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 2.4e-73 279.3 186 71.5
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.1e-73 278.5 193 68.9
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 9.2e-73 277.3 186 68.8
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 9.2e-73 277.3 182 72.5
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.1e-72 276.2 186 71.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.7e-72 275.8 186 69.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.5e-72 275.4 182 73.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 4.6e-72 275.0 186 70.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.6e-72 275.0 182 69.2
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 7.8e-72 274.2 188 70.7
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.0e-71 273.9 184 67.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.3e-71 273.5 188 69.7
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.7e-71 273.1 182 70.3
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.7e-71 273.1 190 68.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.7e-71 273.1 179 70.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.7e-71 273.1 180 71.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.3e-71 272.7 182 69.8
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.9e-71 271.9 183 69.9
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 3.9e-71 271.9 182 68.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.5e-70 270.0 184 69.6
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-70 269.6 182 68.1
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.3e-70 268.5 182 69.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 4.3e-70 268.5 186 69.4
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 4.3e-70 268.5 181 70.2
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.6e-70 268.1 166 74.7
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 7.3e-70 267.7 183 69.4
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.2e-69 266.9 186 69.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.2e-69 266.9 181 69.6
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 6.2e-69 264.6 179 68.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 8.1e-69 264.2 197 66.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.4e-68 263.5 204 61.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.4e-68 263.5 182 69.2
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 2.3e-68 262.7 176 68.8
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 8.9e-68 260.8 181 65.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.5e-67 260.0 182 69.8
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.0e-67 259.6 187 63.6
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.4e-67 258.8 175 69.1
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.4e-67 258.8 184 66.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.4e-67 258.5 192 64.1
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 7.6e-67 257.7 189 64.0
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.7e-66 256.5 179 65.9
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.2e-66 256.1 259 52.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.9e-66 255.8 178 68.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.7e-66 255.4 190 64.7
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.4e-65 253.4 202 62.4
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.9e-65 253.1 158 73.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.4e-65 252.7 176 66.5
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 3.2e-65 252.3 199 60.8
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.2e-65 252.3 205 61.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 4.1e-65 251.9 184 65.2
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.4e-65 251.5 172 68.0
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 7.8e-64 247.7 179 64.2
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 7.8e-64 247.7 180 65.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 7.8e-64 247.7 180 65.0
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.8e-64 247.7 171 66.7
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 7.8e-64 247.7 177 66.1
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-63 246.5 175 65.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.0e-63 245.7 198 60.1
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.0e-63 245.7 185 63.2
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.1e-63 245.0 176 62.5
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 8.6e-63 244.2 198 58.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.6e-63 244.2 184 63.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.1e-62 243.8 179 63.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.1e-62 243.8 179 63.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.3e-62 242.3 178 64.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 4.3e-62 241.9 164 68.9
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.3e-62 241.1 181 58.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 8.9e-60 234.2 174 65.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.2e-59 233.8 187 62.6
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-59 233.4 174 61.5
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 4.4e-59 231.9 179 59.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 5.8e-59 231.5 183 58.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 9.9e-59 230.7 183 58.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.1e-57 227.3 183 58.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 7.1e-57 224.6 167 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.2e-56 223.8 182 59.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.6e-56 223.4 178 59.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.0e-55 220.7 140 74.3
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 3.0e-55 219.2 179 57.5
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.5e-54 216.9 190 54.7
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.5e-54 216.1 162 65.4
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 4.3e-54 215.3 158 64.6
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.3e-54 215.3 161 62.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.6e-54 214.9 150 66.0
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.3e-54 214.5 181 55.2
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-52 209.9 132 74.2
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.0e-52 208.8 177 57.1
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.6e-48 196.8 135 68.1
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.5e-48 195.7 164 59.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.9e-46 189.9 187 50.3
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.5e-46 189.5 166 53.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.5e-46 189.5 164 54.3
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 5.6e-46 188.3 135 63.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.6e-45 185.7 95 91.6
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.1e-45 184.5 166 53.0
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-43 179.1 161 52.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.6e-43 177.9 160 53.1
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.9e-42 175.3 114 71.1
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.3e-39 167.2 181 48.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.4e-38 161.4 150 51.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-37 160.2 143 55.2
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.8e-37 159.5 173 46.8
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 6.2e-37 158.3 178 45.5
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.8e-36 156.8 110 67.3
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-34 150.6 186 45.7
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-34 149.4 123 57.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-34 149.1 164 45.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 8.4e-34 147.9 103 62.1
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.3e-28 128.6 187 39.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-21 107.1 127 40.2
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.6e-16 89.0 116 41.4
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 6.9e-12 75.1 45 75.6
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.5e-11 72.4 46 67.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.5e-11 72.4 52 61.5
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.1e-09 67.8 104 37.5
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-09 67.8 53 54.7
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 6.1e-08 62.0 46 60.9
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 7.9e-08 61.6 50 60.0


User provided reference genes

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