Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2559 Fragaria x ananassa HOM05D001786 ORTHO05D199541 1.0e-60 236.5 116 100.0
FvH4_5g16300 Fragaria vesca HOM05D001786 ORTHO05D001743 7.5e-11 70.9 41 80.5
FAN18G2777 Fragaria x ananassa HOM05D001786 ORTHO05D001743 7.5e-11 70.9 41 80.5
FAN06G0322 Fragaria x ananassa HOM05D001786 ORTHO05D001743 1.3e-10 70.1 41 80.5
FAN08G0927 Fragaria x ananassa HOM05D001786 ORTHO05D001743 1.3e-10 70.1 41 80.5
FAN04G1094 Fragaria x ananassa HOM05D001786 ORTHO05D001743 2.2e-10 69.3 41 78.0
FAN13G2442 Fragaria x ananassa HOM05D001786 ORTHO05D001743 2.2e-10 69.3 41 78.0
FAN06G3380 Fragaria x ananassa HOM05D001786 ORTHO05D001743 3.7e-10 68.6 32 96.9
FAN06G5111 Fragaria x ananassa HOM05D001786 ORTHO05D001743 3.7e-10 68.6 32 96.9
FAN17G2184 Fragaria x ananassa HOM05D008157 ORTHO05D009575 3.7e-10 68.6 32 96.9
RcHm_v2.0_Chr7g0179831 Rosa chinensis HOM05D001786 ORTHO05D001743 4.8e-10 68.2 41 75.6
Psat5g113600 Pisum sativum HOM05D001786 ORTHO05D001743 4.1e-09 65.1 41 68.3
THA.LOC104818223 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 9.1e-09 63.9 41 73.2
TPR.G6829 Trifolium pratense HOM05D001786 ORTHO05D001743 1.6e-08 63.2 39 71.8
Glyma.04G178100 Glycine max HOM05D001786 ORTHO05D001743 2.0e-08 62.8 41 70.7
Lalb_Chr08g0236191 Lupinus albus HOM05D001786 ORTHO05D001743 2.0e-08 62.8 41 70.7
Phvul.009G182600 Phaseolus vulgaris HOM05D001786 ORTHO05D001743 2.0e-08 62.8 41 70.7
THA.LOC104821467 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 2.0e-08 62.8 41 70.7
QL10p013680 Quercus lobata HOM05D001786 ORTHO05D001743 2.7e-08 62.4 41 68.3
Eucgr.B00320 Eucalyptus grandis HOM05D001786 ORTHO05D001743 4.5e-08 61.6 39 69.2
Eucgr.B00324 Eucalyptus grandis HOM05D001786 ORTHO05D001743 4.5e-08 61.6 39 69.2
arahy.Tifrunner.gnm1.ann1.5BI7K5 Arachis hypogaea HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
arahy.Tifrunner.gnm1.ann1.K0ABFQ Arachis hypogaea HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Cpa.g.sc35.29 Carica papaya HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Ca_16214_v3 Cicer arietinum L. HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
COL.COLO4_21449 Corchorus olitorius HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Gohir.A07G040500 Gossypium hirsutum HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Gohir.D07G044700 Gossypium hirsutum HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Gorai.001G047700 Gossypium raimondii HOM05D001786 ORTHO05D001743 5.9e-08 61.2 41 68.3
Glyma.06G186900 Glycine max HOM05D001786 ORTHO05D001743 7.7e-08 60.8 41 68.3
CDE04G0769 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 1.0e-07 60.5 40 70.0
CDE06G0033 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 1.0e-07 60.5 40 70.0
CDE06G1198 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 1.0e-07 60.5 40 70.0
Lj1g0004143 Lotus japonicus HOM05D001786 ORTHO05D001743 1.3e-07 60.1 41 68.3
CiPaw.11G032800 Carya illinoinensis HOM05D001786 ORTHO05D001743 1.7e-07 59.7 39 69.2
ATR0712G113 Amborella trichopoda HOM05D001786 ORTHO05D001743 2.3e-07 59.3 39 69.2
CANSAT80G2372 Cannabis sativa HOM05D001786 ORTHO05D001743 2.3e-07 59.3 40 67.5
ClCG01G014150 Citrullus lanatus HOM05D001786 ORTHO05D001743 2.3e-07 59.3 39 69.2
Cc04_g16240 Coffea canephora HOM05D001786 ORTHO05D001743 2.3e-07 59.3 39 66.7
Thhalv10010862m.g Eutrema salsugineum HOM05D001786 ORTHO05D001743 2.3e-07 59.3 32 78.1
Lalb_Chr11g0070541 Lupinus albus HOM05D001786 ORTHO05D001743 2.3e-07 59.3 40 65.0
Sed0027667 Sechium edule HOM05D001786 ORTHO05D001743 2.3e-07 59.3 39 69.2
Cfa019061 Carpinus fangiana HOM05D001786 ORTHO05D001743 2.9e-07 58.9 39 66.7
Haze_07430 Corylus avellana HOM05D001786 ORTHO05D001743 2.9e-07 58.9 39 66.7
MELO3C002233.2 Cucumis melo HOM05D001786 ORTHO05D001743 2.9e-07 58.9 39 66.7
CsaV3_1G008160 Cucumis sativus L. HOM05D001786 ORTHO05D001743 2.9e-07 58.9 39 66.7
Atru.chr9.2392 Acer truncatum HOM05D001786 ORTHO05D001743 3.8e-07 58.5 39 66.7
EL10Ac2g04638 Beta vulgaris HOM05D001786 ORTHO05D001743 3.8e-07 58.5 38 68.4
BcaC01g02310 Brassica carinata HOM05D001786 ORTHO05D001743 3.8e-07 58.5 32 78.1
BcaC01g02320 Brassica carinata HOM05D001786 ORTHO05D001743 3.8e-07 58.5 32 78.1
A06p27420 Brassica napus HOM05D001786 ORTHO05D001743 3.8e-07 58.5 32 78.1
BraA06t25681Z Brassica rapa HOM05D001786 ORTHO05D001743 3.8e-07 58.5 32 78.1
CARHR156860 Cardamine hirsuta HOM05D001786 ORTHO05D001743 3.8e-07 58.5 32 78.1
Hma1.2p1_0849F.1_g228090 Hydrangea macrophylla HOM05D001786 ORTHO05D001743 3.8e-07 58.5 74 41.9
Ah.10g037320 Amaranthus hybridus HOM05D001786 ORTHO05D001743 5.0e-07 58.2 38 65.8
AT3G48140 Arabidopsis thaliana HOM05D001786 ORTHO05D001743 5.0e-07 58.2 32 78.1
CSS0006868 Camellia sinensis var. sinensis HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
CSS0014513 Camellia sinensis var. sinensis HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Dinv13131 Davidia involucrata HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Medtr3g078590 Medicago truncatula HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Nitab4.5_0001727g0100 Nicotiana tabacum HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Nitab4.5_0003431g0030 Nicotiana tabacum HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
PGR083G2603 Punica granatum HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Sc04g0002170 Simmondsia chinensis HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
PGSC0003DMG400006903 Solanum tuberosum HOM05D001786 ORTHO05D001743 5.0e-07 58.2 39 66.7
Aa31LG4G16740 Aethionema arabicum HOM05D001786 ORTHO05D001743 6.6e-07 57.8 32 75.0
Potri.012G074900 Populus trichocarpa HOM05D001786 ORTHO05D001743 6.6e-07 57.8 39 66.7
Prupe.1G234100 Prunus persica HOM05D001786 ORTHO05D001743 6.6e-07 57.8 33 75.8
Solyc02g067580.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 6.6e-07 57.8 39 64.1
Sopen02g016710 Solanum pennellii HOM05D001786 ORTHO05D001743 6.6e-07 57.8 39 64.1
Aqoxy3G00872 Aquilegia oxysepala HOM05D001786 ORTHO05D001743 8.6e-07 57.4 38 68.4
Duzib068G0430 Durio zibethinus HOM05D001786 ORTHO05D001743 8.6e-07 57.4 41 65.9
Sed0022631 Sechium edule HOM05D001786 ORTHO05D001743 8.6e-07 57.4 39 64.1
BcaB01g00843 Brassica carinata HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
BcaB02g10672 Brassica carinata HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
BcaC07g39295 Brassica carinata HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
A06p19560 Brassica napus HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
BolC8t49940H Brassica oleracea HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
BraA06t25036Z Brassica rapa HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
Carub.0005s1424 Capsella rubella HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
CDE06G1669 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 71.9
Sp5g22650 Schrenkiella parvula HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
TWI75G1133 Tripterygium wilfordii HOM05D001786 ORTHO05D001743 1.1e-06 57.0 32 75.0
AL5G27470 Arabidopsis lyrata HOM05D001786 ORTHO05D001743 1.5e-06 56.6 32 75.0
CAN.G206.70 Capsicum annuum HOM05D001786 ORTHO05D001743 1.5e-06 56.6 32 78.1
CAN.G853.28 Capsicum annuum HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 74.2
Duzib205G2033 Durio zibethinus HOM05D001786 ORTHO05D001743 1.5e-06 56.6 41 65.9
Glyma.18G009800 Glycine max HOM05D001786 ORTHO05D001743 1.5e-06 56.6 33 72.7
MD06G1182100 Malus domestica HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 77.4
MD14G1188100 Malus domestica HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 77.4
Nn3g17038 Nelumbo nucifera HOM05D001786 ORTHO05D001743 1.5e-06 56.6 30 80.0
Nitab4.5_0005005g0020 Nicotiana tabacum HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 74.2
Phvul.001G258900 Phaseolus vulgaris HOM05D001786 ORTHO05D001743 1.5e-06 56.6 33 72.7
Solyc03g113730.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 74.2
Sopen03g032780 Solanum pennellii HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 74.2
PGSC0003DMG400024468 Solanum tuberosum HOM05D001786 ORTHO05D001743 1.5e-06 56.6 31 74.2
Thecc.03G002800 Theobroma cacao HOM05D001786 ORTHO05D001743 1.5e-06 56.6 41 63.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.5e-06 56.6 33 72.7
ATR0686G236 Amborella trichopoda HOM05D001786 ORTHO05D001743 1.9e-06 56.2 32 71.9
CDE07G1360 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 1.9e-06 56.2 39 61.5
Lalb_Chr08g0230721 Lupinus albus HOM05D001786 ORTHO05D001743 1.9e-06 56.2 33 69.7
Lalb_Chr11g0075671 Lupinus albus HOM05D001786 ORTHO05D001743 1.9e-06 56.2 33 72.7
SalBow3G1746 Salvia bowleyana HOM05D001786 ORTHO05D001743 1.9e-06 56.2 39 64.1
Sc14g0008960 Simmondsia chinensis HOM05D001786 ORTHO05D001743 1.9e-06 56.2 33 72.7
GSVIVG01007833001 Vitis vinifera HOM05D001786 ORTHO05D001743 1.9e-06 56.2 39 64.1
Zm00001eb280100 Zea mays HOM05D001786 ORTHO05D001743 1.9e-06 56.2 32 75.0
Actinidia33980 Actinidia chinensis HOM05D001786 ORTHO05D001743 2.5e-06 55.8 39 64.1
AUR62008293 Chenopodium quinoa HOM05D001786 ORTHO05D001743 2.5e-06 55.8 39 64.1
Dinv33681 Davidia involucrata HOM05D001786 ORTHO05D001743 2.5e-06 55.8 39 64.1
Sp5g13900 Schrenkiella parvula HOM05D001786 ORTHO05D001743 2.5e-06 55.8 32 71.9
CANSAT01G1258 Cannabis sativa HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
CiPaw.06G099200 Carya illinoinensis HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
Migut.J01168 Erythranthe guttata HOM05D001786 ORTHO05D001743 3.3e-06 55.5 31 74.2
Glyma.11G247500 Glycine max HOM05D001786 ORTHO05D001743 3.3e-06 55.5 33 69.7
Peaxi162Scf00129g00731 Petunia axillaris HOM05D001786 ORTHO05D001743 3.3e-06 55.5 30 80.0
PGR119G2393 Punica granatum HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
Rhsim08G0062700 Rhododendron simsii HOM05D001786 ORTHO05D001743 3.3e-06 55.5 39 61.5
Solyc02g087330.3 Solanum lycopersicum HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
Sopen02g032080 Solanum pennellii HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
PGSC0003DMG400001395 Solanum tuberosum HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
GSVIVG01010327001 Vitis vinifera HOM05D001786 ORTHO05D001743 3.3e-06 55.5 32 75.0
Aqoxy3G03143 Aquilegia oxysepala HOM05D001786 ORTHO05D001743 4.2e-06 55.1 38 65.8
Lalb_Chr13g0294151 Lupinus albus HOM05D001786 ORTHO05D001743 4.2e-06 55.1 32 68.8
MD13G1111400 Malus domestica HOM05D001786 ORTHO05D001743 4.2e-06 55.1 33 69.7
Prupe.5G180300 Prunus persica HOM05D001786 ORTHO05D001743 4.2e-06 55.1 30 76.7
Rhsim12G0106400 Rhododendron simsii HOM05D001786 ORTHO05D001743 4.2e-06 55.1 32 68.8
Hund13753 Selenicereus undatus HOM05D001786 ORTHO05D001743 4.2e-06 55.1 39 64.1
THA.LOC104825524 Tarenaya hassleriana HOM05D001786 ORTHO05D001743 4.2e-06 55.1 31 74.2
ClCG08G017340 Citrullus lanatus HOM05D001786 ORTHO05D001743 5.5e-06 54.7 33 69.7
Cc07_g02750 Coffea canephora HOM05D001786 ORTHO05D001743 5.5e-06 54.7 39 61.5
Oeu060598.1 Olea europaea HOM05D001786 ORTHO05D001743 5.5e-06 54.7 31 77.4
Os07g0274400 Oryza sativa ssp. japonica HOM05D001786 ORTHO05D001743 5.5e-06 54.7 34 67.6
SalBow1G3088 Salvia bowleyana HOM05D001786 ORTHO05D001743 5.5e-06 54.7 31 77.4
Actinidia25753 Actinidia chinensis HOM05D001786 ORTHO05D001743 7.2e-06 54.3 34 67.6
EL10Ac5g10848 Beta vulgaris HOM05D001786 ORTHO05D001743 7.2e-06 54.3 39 61.5
CDE04G3501 Ceratophyllum demersum HOM05D001786 ORTHO05D001743 7.2e-06 54.3 39 59.0
Eucgr.H04674 Eucalyptus grandis HOM05D001786 ORTHO05D001743 7.2e-06 54.3 33 66.7
HanXRQChr12g0385621 Helianthus annuus HOM05D001786 ORTHO05D001743 7.2e-06 54.3 30 76.7
Manes.06G099900 Manihot esculenta HOM05D001786 ORTHO05D001743 7.2e-06 54.3 38 63.2
Manes.12G015600 Manihot esculenta HOM05D001786 ORTHO05D001743 7.2e-06 54.3 32 71.9
Manes.14G071100 Manihot esculenta HOM05D001786 ORTHO05D001743 7.2e-06 54.3 38 63.2
Nitab4.5_0004905g0080 Nicotiana tabacum HOM05D001786 ORTHO05D001743 7.2e-06 54.3 30 76.7
Nitab4.5_0010004g0030 Nicotiana tabacum HOM05D001786 ORTHO05D001743 7.2e-06 54.3 30 76.7
PSO013G0264 Papaver somniferum HOM05D001786 ORTHO05D001743 7.2e-06 54.3 32 71.9
PSO832G2026 Papaver somniferum HOM05D001786 ORTHO05D001743 7.2e-06 54.3 32 71.9
Peaxi162Scf00017g02227 Petunia axillaris HOM05D001786 ORTHO05D001743 7.2e-06 54.3 34 67.6
Cfa009308 Carpinus fangiana HOM05D001786 ORTHO05D001743 9.5e-06 53.9 32 68.8
DCAR_013967 Daucus carota HOM05D001786 ORTHO05D001743 9.5e-06 53.9 30 73.3
Migut.H00176 Erythranthe guttata HOM05D001786 ORTHO05D001743 9.5e-06 53.9 31 74.2
FvH4_4g24540 Fragaria vesca HOM05D001786 ORTHO05D001743 9.5e-06 53.9 32 71.9
FAN07G0552 Fragaria x ananassa HOM05D001786 ORTHO05D001743 9.5e-06 53.9 32 71.9
FAN12G3897 Fragaria x ananassa HOM05D001786 ORTHO05D001743 9.5e-06 53.9 32 71.9
FAN22G1117 Fragaria x ananassa HOM05D001786 ORTHO05D001743 9.5e-06 53.9 32 71.9
Lj6g0017781 Lotus japonicus HOM05D001786 ORTHO05D001743 9.5e-06 53.9 33 66.7
Medtr3g085890 Medicago truncatula HOM05D001786 ORTHO05D001743 9.5e-06 53.9 33 69.7
Os06g0246000 Oryza sativa ssp. japonica HOM05D001786 ORTHO05D001743 9.5e-06 53.9 31 71.0


User provided reference genes

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