Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.5e-144 514.6 264 100.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.1e-139 500.0 264 97.7
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.3e-139 498.4 263 97.3
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.1e-138 495.7 264 96.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.1e-137 491.9 264 96.6
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.0e-137 490.3 264 96.2
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.0e-137 490.3 264 96.2
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.6e-130 469.5 264 91.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 7.2e-110 401.0 262 77.5
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.1e-97 360.5 262 70.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.8e-97 359.8 272 69.9
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 5.0e-95 351.7 271 67.9
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.2e-91 340.5 279 64.9
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.8e-90 335.9 270 65.9
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-89 333.6 263 66.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.8e-89 333.2 282 63.5
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.4e-89 331.6 263 66.2
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.8e-87 325.5 266 66.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 6.5e-87 324.7 270 64.4
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 1.5e-86 323.6 262 66.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.1e-85 319.7 269 65.1
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.5e-83 313.5 271 63.5
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.6e-83 312.8 270 63.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 2.6e-83 312.8 271 62.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.6e-83 312.8 271 62.7
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.7e-82 308.9 266 63.2
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.1e-81 307.4 260 64.6
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-81 306.2 260 64.6
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.1e-81 305.4 261 65.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.6e-80 303.5 281 60.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.5e-78 296.2 268 60.4
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.5e-78 296.2 260 60.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.3e-78 295.8 255 62.4
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 7.3e-78 294.7 262 62.6
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.6e-77 293.5 260 58.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 3.6e-77 292.4 259 61.4
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 6.1e-77 291.6 260 60.4
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.0e-76 290.8 265 59.2
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.4e-76 290.4 258 60.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 4.0e-76 288.9 256 60.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.0e-75 286.6 265 59.6
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 4.4e-75 285.4 263 58.6
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.3e-74 283.9 273 56.4
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.2e-74 283.1 264 56.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 2.2e-74 283.1 263 61.2
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.4e-74 281.6 244 62.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.4e-73 280.4 166 88.6
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 4.1e-73 278.9 271 60.5
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.6e-72 276.9 257 59.5
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.0e-72 276.6 259 58.7
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 1.0e-71 274.2 269 58.4
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.9e-71 272.3 265 57.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 6.6e-71 271.6 271 54.2
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.1e-70 270.8 230 62.2
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-70 270.4 230 61.7
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.5e-70 269.6 263 56.7
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 6.2e-69 265.0 271 55.4
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.0e-68 264.2 261 55.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.4e-68 263.8 269 54.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-68 262.7 259 54.1
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.1e-68 262.7 262 52.7
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 8.9e-68 261.2 265 52.8
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 2.6e-67 259.6 244 57.4
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 4.4e-67 258.8 262 52.3
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 7.5e-67 258.1 260 55.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.9e-66 256.1 251 55.4
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.4e-66 255.0 259 52.9
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 9.2e-65 251.1 264 56.1
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.0e-64 250.0 254 54.3
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 3.5e-64 249.2 268 52.2
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.6e-64 248.8 268 53.0
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 6.0e-64 248.4 253 56.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.7e-63 246.9 220 62.3
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.3e-63 246.5 247 53.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.5e-62 243.8 268 54.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.5e-62 243.0 173 68.2
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 5.6e-62 241.9 253 53.4
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 5.6e-62 241.9 265 52.8
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.6e-61 240.4 261 53.6
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.3e-60 236.5 277 48.0
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-60 236.1 257 49.8
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.9e-60 234.6 274 48.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.6e-59 233.0 251 52.6
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.8e-59 231.9 260 52.7
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.8e-59 231.9 260 52.7
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 7.5e-59 231.5 269 50.9
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 9.8e-59 231.1 271 49.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.9e-58 228.8 250 50.0
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.4e-58 228.4 270 48.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 8.3e-58 228.0 260 49.2
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 8.3e-58 228.0 274 48.5
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 5.4e-57 225.3 252 50.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 5.4e-57 225.3 253 51.4
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.1e-56 223.4 249 53.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.7e-56 223.0 254 51.6
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.6e-56 222.2 256 48.4
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.0e-55 221.1 264 52.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.0e-55 221.1 254 46.5
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.0e-55 219.5 251 50.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.9e-55 219.2 262 51.5
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 5.1e-55 218.8 253 52.2
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.6e-55 218.4 265 50.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.1e-54 217.6 262 50.0
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.9e-54 216.9 254 50.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 7.3e-54 214.9 248 47.2
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.6e-53 212.6 261 50.2
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.2e-53 211.8 202 56.4
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.4e-52 210.7 254 50.0
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.8e-52 210.3 249 49.8
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.3e-52 209.9 250 51.2
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 2.3e-52 209.9 270 49.6
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.1e-52 209.5 262 49.6
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.1e-52 209.5 262 49.6
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 5.2e-52 208.8 264 49.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 5.2e-52 208.8 258 49.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 5.2e-52 208.8 251 50.2
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.2e-51 207.6 251 50.2
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.0e-51 206.8 204 53.9
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-51 205.3 263 44.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 4.9e-50 202.2 199 53.3
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.4e-49 200.7 249 48.6
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.9e-49 200.3 250 48.8
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 5.4e-49 198.7 249 47.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.1e-49 198.4 250 49.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.1e-48 196.8 249 47.0
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.1e-48 196.8 194 54.6
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.5e-48 196.1 253 46.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.7e-47 193.7 268 45.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.7e-47 193.7 227 49.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.9e-47 192.6 194 53.1
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.9e-47 192.6 195 51.3
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.9e-47 192.6 195 51.3
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.8e-44 183.7 254 43.3
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.2e-43 181.0 262 43.9
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-43 180.3 209 54.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.8e-42 176.0 116 71.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 3.2e-41 172.9 158 52.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 5.4e-41 172.2 273 40.3
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 7.1e-41 171.8 252 43.3
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.6e-40 170.6 150 56.0
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.6e-40 170.6 117 69.2
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.7e-40 169.9 220 43.2
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.9e-38 163.7 244 45.1
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-37 158.7 105 74.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.6e-35 153.3 125 58.4
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.1e-33 145.2 131 52.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.8e-26 122.9 108 54.6
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 9.3e-25 118.2 125 45.6
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-23 114.4 82 69.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.2e-19 101.3 249 32.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.1e-16 90.5 70 60.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 8.7e-15 85.1 83 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.1e-14 84.7 90 41.1
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 7.4e-14 82.0 172 31.4
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.1e-12 76.6 142 33.1
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 1.5e-11 74.3 169 27.2


User provided reference genes

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