Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.0e-235 819.7 414 100.0
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.8e-231 803.1 414 97.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-229 798.9 414 97.3
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 6.0e-228 793.9 415 97.1
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-227 791.2 415 96.6
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-226 788.9 415 96.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 7.8e-220 766.9 417 93.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.1e-178 630.2 419 78.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.8e-174 615.1 382 81.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 5.5e-173 611.3 417 75.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.0e-163 578.9 417 71.7
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.3e-161 573.5 418 70.3
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.2e-161 570.9 403 73.4
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 9.1e-160 567.4 418 68.2
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-159 567.0 416 70.0
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.6e-159 565.8 422 68.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.5e-159 565.5 418 67.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 3.6e-156 555.4 408 69.6
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.0e-155 553.9 422 69.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 5.2e-155 551.6 407 69.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.5e-154 550.1 413 68.5
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 2.0e-154 549.7 408 69.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.3e-154 548.9 413 68.0
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 5.9e-151 538.1 410 67.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.1e-149 533.9 410 66.6
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.5e-149 533.5 419 65.4
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 7.2e-149 531.2 409 67.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.7e-148 529.3 408 66.9
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 4.7e-148 528.5 401 68.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.8e-147 526.6 398 67.8
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.8e-147 524.6 418 66.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.8e-147 524.6 406 67.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.4e-146 522.3 381 70.3
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 4.4e-146 521.9 399 66.4
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 7.5e-146 521.2 411 65.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 7.5e-146 521.2 406 66.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.8e-145 518.5 415 65.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.8e-145 518.5 379 69.1
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.8e-145 518.5 417 63.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-144 517.3 412 66.5
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.4e-144 516.2 414 66.2
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.1e-144 515.8 403 65.8
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 9.1e-144 514.2 413 62.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.2e-143 513.8 331 75.8
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.7e-143 512.7 407 65.4
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.5e-143 512.3 409 65.5
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.5e-143 512.3 374 70.1
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.7e-142 510.0 414 64.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.2e-142 509.6 418 63.4
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.2e-142 509.6 415 62.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.9e-142 509.2 407 64.6
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.2e-141 505.4 399 67.4
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 9.4e-141 504.2 393 64.6
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.2e-140 503.8 355 69.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.2e-140 503.8 362 67.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-140 503.4 397 64.2
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.6e-140 503.4 397 64.2
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.1e-140 503.1 351 70.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.7e-140 502.7 406 64.3
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 4.7e-140 501.9 384 66.1
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 6.1e-140 501.5 358 68.7
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 6.1e-140 501.5 365 67.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 8.0e-140 501.1 410 63.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.0e-139 500.7 393 64.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.8e-139 500.0 416 61.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 5.2e-139 498.4 483 56.9
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.2e-139 498.4 420 63.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 8.8e-139 497.7 362 68.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 8.8e-139 497.7 362 68.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 8.8e-139 497.7 404 62.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.5e-138 496.9 400 63.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.0e-138 496.5 395 64.6
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.4e-138 495.7 370 67.0
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 4.4e-138 495.4 403 63.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.4e-138 495.4 401 63.1
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.3e-137 493.8 411 62.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.7e-137 493.4 419 62.1
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.7e-137 493.4 391 65.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 3.7e-137 492.3 390 64.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.9e-137 491.9 421 61.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 8.3e-137 491.1 400 64.8
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.1e-136 490.7 420 62.6
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 7.0e-136 488.0 403 63.8
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 7.0e-136 488.0 329 73.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 4.5e-135 485.3 413 57.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.3e-134 483.8 358 65.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.0e-134 481.9 351 64.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.9e-133 479.9 403 61.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.3e-133 479.2 418 61.2
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 5.6e-133 478.4 403 61.8
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 9.5e-133 477.6 366 61.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.6e-132 476.9 407 61.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.8e-132 476.1 393 63.1
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.0e-132 474.6 410 61.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.3e-131 473.0 353 66.9
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.3e-131 473.0 407 60.4
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.0e-131 472.6 386 64.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.0e-131 472.6 409 60.9
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.7e-129 466.8 332 68.7
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.4e-129 464.9 401 61.1
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 8.3e-129 464.5 401 60.3
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.1e-128 464.2 409 59.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.8e-128 463.4 411 60.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 9.2e-128 461.1 334 67.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.2e-127 460.7 381 61.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 4.6e-127 458.8 409 59.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.5e-125 453.0 410 59.0
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.3e-125 451.4 331 68.6
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.0e-123 445.7 230 97.4
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 8.9e-123 444.5 344 65.7
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.2e-116 421.8 349 62.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.3e-115 419.9 304 65.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.3e-113 414.1 406 55.9
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 3.7e-113 412.5 394 57.4
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-111 407.5 356 59.3
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-110 403.7 338 60.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.9e-110 402.5 296 70.6
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 8.1e-108 394.8 415 52.8
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-106 391.0 391 51.9
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-106 390.2 342 55.6
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-104 384.4 342 55.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.4e-104 383.3 410 54.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 9.6e-101 371.3 352 52.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.6e-95 354.0 423 49.2
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.7e-94 348.2 281 64.4
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.2e-90 337.8 313 52.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 8.7e-86 321.6 225 68.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.5e-77 293.5 303 47.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.7e-76 289.7 252 61.5
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.8e-74 282.3 312 46.5
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.0e-73 281.6 332 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-73 281.6 318 45.6
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-69 268.1 310 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.3e-68 262.3 292 46.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-65 253.4 287 43.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-64 250.4 293 43.0
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-64 249.2 290 44.1
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.1e-63 247.3 299 42.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.1e-62 242.7 218 60.6
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-61 241.5 289 40.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 291 42.6
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.1e-59 233.0 162 67.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-58 230.7 153 75.2
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-58 230.3 267 43.4
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-56 224.6 121 97.5
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-51 208.4 200 56.0
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.8e-51 207.6 380 34.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.6e-47 193.4 329 36.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.7e-46 189.1 318 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.8e-46 188.7 153 55.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-45 188.3 158 59.5
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-45 187.6 327 33.9
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.7e-44 183.3 355 34.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-43 181.8 325 36.0
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-41 174.5 309 33.3
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.0e-39 165.6 142 61.3
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.4e-38 164.9 219 40.6
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.3e-36 156.0 319 28.2
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.4e-35 154.1 80 97.5
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.0e-33 148.7 293 35.5
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.2e-32 143.7 311 29.9
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.3e-28 129.4 293 29.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-27 128.6 119 51.3
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.0e-27 125.9 218 31.7
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.9e-26 122.9 341 28.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.9e-26 122.9 103 54.4
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.8e-25 120.2 76 78.9
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-24 118.2 308 32.1
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-24 117.9 167 38.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.9e-24 117.9 316 29.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.2e-24 116.7 76 75.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-21 108.2 316 29.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.3e-20 102.4 310 28.4
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 7.0e-19 99.4 345 27.8
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.7e-17 94.7 304 26.0
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.4e-12 76.3 61 63.9
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-11 73.9 143 32.9
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-06 57.8 91 36.3


User provided reference genes

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