Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2258 Fragaria x ananassa HOM05D000007 ORTHO05D029656 1.2e-126 456.4 223 100.0
FAN03G2907 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.4e-105 385.2 203 94.6
FvH4_7g29450 Fragaria vesca HOM05D000007 ORTHO05D029656 3.6e-86 322.0 207 80.7
FAN06G0403 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.8e-83 311.6 209 78.9
FAN06G0788 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-69 264.6 149 83.9
FAN01G0152 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.3e-55 218.0 111 93.7
RcHm_v2.0_Chr2g0107841 Rosa chinensis HOM05D000007 ORTHO05D000017 3.8e-27 125.9 166 42.8
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 8.4e-27 124.8 164 42.1
FvH4_2g36711 Fragaria vesca HOM05D000007 ORTHO05D000017 9.3e-26 121.3 160 45.6
FAN27G2044 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.7e-25 119.8 160 45.6
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-25 119.4 154 46.8
FAN15G1356 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-24 117.5 160 45.0
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-23 114.0 156 41.0
FAN23G0995 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-22 110.9 162 40.7
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 2.8e-22 109.8 168 39.3
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 8.1e-22 108.2 156 40.4
FAN20G2365 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-21 107.8 158 42.4
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 3.1e-21 106.3 156 44.9
FAN26G2312 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-20 104.0 154 37.7
FAN23G1980 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-20 103.2 157 37.6
RcHm_v2.0_Chr2g0107821 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-20 103.2 153 40.5
FvH4_1g13750 Fragaria vesca HOM05D000007 ORTHO05D035254 3.4e-20 102.8 164 37.8
FAN19G0773 Fragaria x ananassa HOM05D000007 ORTHO05D035254 3.4e-20 102.8 164 37.8
FvH4_1g13760 Fragaria vesca HOM05D000007 ORTHO05D035254 5.8e-20 102.1 156 38.5
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.8e-20 102.1 154 39.0
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-19 100.9 165 37.6
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-19 100.5 159 41.5
FvH4_1g17570 Fragaria vesca HOM05D000007 ORTHO05D000017 4.9e-19 99.0 165 36.4
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-19 99.0 153 44.4
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 6.4e-19 98.6 155 40.6
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 8.4e-19 98.2 164 37.8
FAN23G2354 Fragaria x ananassa HOM05D000007 ORTHO05D029656 1.6e-17 94.0 162 40.7
FAN27G1786 Fragaria x ananassa HOM05D000007 ORTHO05D029656 1.6e-17 94.0 159 40.3
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-17 93.2 151 41.1
FvH4_1g13770 Fragaria vesca HOM05D000007 ORTHO05D000017 4.6e-17 92.4 79 51.9
FAN11G0467 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.9e-17 91.7 151 41.1
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.9e-16 89.4 152 38.8
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 5.1e-16 89.0 151 37.1
FvH4_1g17560 Fragaria vesca HOM05D000007 ORTHO05D000017 6.7e-16 88.6 134 40.3
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 8.7e-16 88.2 102 47.1
FvH4_3g14952 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-15 87.8 152 38.2
FAN16G2932 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-15 87.8 151 39.7
FvH4_1g17540 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-15 87.4 180 37.2
FAN17G2535 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.9e-15 87.0 153 41.8
FAN14G3180 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.4e-15 85.1 171 36.8
RcHm_v2.0_Chr5g0059551 Rosa chinensis HOM05D000007 ORTHO05D000017 7.4e-15 85.1 156 34.6
RcHm_v2.0_Chr2g0107781 Rosa chinensis HOM05D000007 ORTHO05D000017 9.6e-15 84.7 152 41.4
FAN25G0061 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-14 84.3 149 36.2
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-14 83.2 157 36.3
FAN16G0155 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.8e-14 83.2 141 35.5
FvH4_6g14993 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-14 82.8 170 34.1
FAN25G2917 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.2e-14 82.0 152 34.9
FAN16G3676 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-13 81.3 149 34.9
FvH4_6g14972 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-13 80.1 171 36.3
FvH4_3g44660 Fragaria vesca HOM05D000007 ORTHO05D000017 3.1e-13 79.7 151 34.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 4.0e-13 79.3 171 34.5
FvH4_1g13860 Fragaria vesca HOM05D000007 ORTHO05D000017 5.3e-13 79.0 152 35.5
FAN25G2493 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.3e-13 79.0 151 34.4
FvH4_6g14900 Fragaria vesca HOM05D000007 ORTHO05D000017 6.9e-13 78.6 168 33.9
FAN14G5209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.0e-13 78.2 164 32.9
FAN19G2602 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.0e-13 78.2 178 33.7
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-12 77.8 178 29.8
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 1.2e-12 77.8 154 33.8
FvH4_1g13850 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-12 76.3 88 43.2
FAN09G0908 Fragaria x ananassa HOM05D000082 ORTHO05D009107 4.5e-12 75.9 169 32.0
FvH4_3g45161 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-11 74.7 149 29.5
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-11 74.3 125 37.6
RcHm_v2.0_Chr5g0059111 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-11 74.3 161 31.1
FvH4_1g18430 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-11 73.6 164 28.7
FvH4_6g15010 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-11 73.2 159 32.1
FvH4_3g01100 Fragaria vesca HOM05D000007 ORTHO05D000017 4.9e-11 72.4 149 34.2
RcHm_v2.0_Chr2g0101031 Rosa chinensis HOM05D000007 ORTHO05D000017 4.9e-11 72.4 153 33.3
FAN19G3196 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.5e-11 72.0 162 30.9
FvH4_6g14981 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-10 71.2 170 32.4
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-10 71.2 156 30.8
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-10 71.2 149 34.2
RcHm_v2.0_Chr5g0059201 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-10 70.9 152 31.6
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-10 70.9 105 42.9
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-10 70.5 150 34.7
FvH4_6g14980 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-10 70.5 166 34.3
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 1.9e-10 70.5 159 32.1
FvH4_1g09021 Fragaria vesca HOM05D000007 ORTHO05D000017 3.2e-10 69.7 100 39.0
FAN21G0670 Fragaria x ananassa HOM05D000870 ORTHO05D000715 7.1e-10 68.6 135 31.1
FAN19G2933 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.3e-10 68.2 74 45.9
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 9.3e-10 68.2 136 33.1
RcHm_v2.0_Chr5g0024531 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-09 67.4 79 46.8
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-09 67.0 172 30.8
FvH4_3g45110 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-09 67.0 111 38.7
FAN09G3188 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-09 66.2 111 36.9
RcHm_v2.0_Chr1g0378141 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-09 66.2 80 45.0
RcHm_v2.0_Chr3g0468191 Rosa chinensis HOM05D000007 ORTHO05D000017 4.6e-09 65.9 172 31.4
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 7.9e-09 65.1 160 31.9
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-08 64.3 151 30.5
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.3e-08 64.3 160 31.9
RcHm_v2.0_Chr5g0053901 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-08 63.9 152 32.9
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-08 63.9 150 31.3
RcHm_v2.0_Chr5g0081341 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-08 63.9 125 34.4
FAN15G0281 Fragaria x ananassa HOM05D000007 ORTHO05D035269 3.0e-08 63.2 86 40.7
FvH4_3g42302 Fragaria vesca HOM05D000007 ORTHO05D000017 6.7e-08 62.0 108 34.3
FAN14G2654 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-08 62.0 111 35.1
FAN26G1364 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.7e-08 62.0 120 33.3
FvH4_6g14991 Fragaria vesca HOM05D000007 ORTHO05D000017 8.7e-08 61.6 171 29.2
FAN15G3234 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.7e-08 61.6 145 37.2
RcHm_v2.0_Chr2g0086041 Rosa chinensis HOM05D000007 ORTHO05D013322 8.7e-08 61.6 187 28.3
Solyc10g008450.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 8.7e-08 61.6 127 29.1
FvH4_3g42450 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-07 61.2 123 32.5
Sopen10g004270 Solanum pennellii HOM05D000007 ORTHO05D000017 1.1e-07 61.2 111 30.6
FvH4_3g44671 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-07 60.8 94 35.1
FAN14G5312 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.5e-07 60.8 104 35.6
FvH4_6g19961 Fragaria vesca HOM05D000007 ORTHO05D000017 1.9e-07 60.5 116 35.3
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-07 60.5 152 34.2
FvH4_3g42470 Fragaria vesca HOM05D000007 ORTHO05D000017 2.5e-07 60.1 159 30.2
PGSC0003DMG403021681 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.5e-07 60.1 82 36.6
RcHm_v2.0_Chr6g0299781 Rosa chinensis HOM05D000007 ORTHO05D035269 3.3e-07 59.7 104 34.6
TWI38G0976 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 3.3e-07 59.7 80 36.2
FvH4_3g32390 Fragaria vesca HOM05D000007 ORTHO05D035417 5.7e-07 58.9 114 29.8
FAN11G1339 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.7e-07 58.9 106 34.0
FAN11G1511 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.7e-07 58.9 106 34.0
FAN16G3706 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.7e-07 58.9 106 34.0
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 7.4e-07 58.5 70 41.4
Atru.chr1.2424 Acer truncatum HOM05D000007 ORTHO05D000017 9.6e-07 58.2 86 37.2
Atru.chr1.2426 Acer truncatum HOM05D000007 ORTHO05D000017 9.6e-07 58.2 86 37.2
Solyc01g067010.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 9.6e-07 58.2 125 28.8
Gohir.D08G025855 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.3e-06 57.8 71 45.1
Gorai.004G021800 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.3e-06 57.8 71 45.1
Aqoxy4G01251 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.6e-06 57.4 73 35.6
Lj7P502T13 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-06 57.0 109 33.9
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 2.1e-06 57.0 76 40.8
PGSC0003DMG400003427 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.1e-06 57.0 125 28.8
PGSC0003DMG400003428 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.1e-06 57.0 125 28.8
BolC3t20695H Brassica oleracea HOM05D000007 ORTHO05D000017 2.8e-06 56.6 96 36.5
FvH4_5g37874 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-06 56.6 85 41.2
FAN08G2632 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-06 56.6 85 41.2
AL7G31190 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 3.7e-06 56.2 136 32.4
Thhalv10025373m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 3.7e-06 56.2 96 37.5
FAN03G1705 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-06 56.2 125 30.4
FAN06G3389 Fragaria x ananassa HOM05D020036 ORTHO05D013322 3.7e-06 56.2 126 31.0
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 3.7e-06 56.2 83 37.3
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 3.7e-06 56.2 166 30.1
TWI34G0173 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 3.7e-06 56.2 88 36.4
Gorai.004G021600 Gossypium raimondii HOM05D000007 ORTHO05D000017 4.8e-06 55.8 172 30.8
RcHm_v2.0_Chr2g0122651 Rosa chinensis HOM05D000007 ORTHO05D013322 4.8e-06 55.8 85 37.6
BcaC01g00777 Brassica carinata HOM05D000007 ORTHO05D000017 6.3e-06 55.5 96 36.5
A08p15730 Brassica napus HOM05D000007 ORTHO05D000017 6.3e-06 55.5 136 30.1
FAN23G2883 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.3e-06 55.5 78 37.2
FAN26G3382 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.3e-06 55.5 98 35.7
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 6.3e-06 55.5 164 29.9
RcHm_v2.0_Chr5g0076091 Rosa chinensis HOM05D000007 ORTHO05D000017 6.3e-06 55.5 118 34.7
CAN.G1096.1 Capsicum annuum HOM05D000007 ORTHO05D000017 8.2e-06 55.1 129 28.7


User provided reference genes

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