Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-104 382.5 193 100.0
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-103 379.8 193 99.5
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.6e-103 379.4 193 99.0
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 4.8e-103 377.9 193 98.4
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.5e-101 372.9 193 97.4
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-100 369.8 193 96.9
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 2.7e-82 308.9 194 83.5
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 5.9e-61 238.0 202 67.3
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 8.8e-57 224.2 203 64.0
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.0e-36 157.5 177 54.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.1e-35 154.1 177 52.5
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.4e-30 137.1 173 50.3
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.8e-30 136.7 191 47.1
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.3e-28 130.6 216 44.0
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.3e-28 130.6 216 44.0
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.5e-27 127.1 168 47.6
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 7.3e-27 124.8 165 47.3
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 4.7e-26 122.1 128 52.3
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 2.3e-25 119.8 164 47.0
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 2.3e-25 119.8 163 47.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 5.2e-25 118.6 183 43.2
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.2e-24 117.5 164 46.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.5e-24 117.1 152 48.7
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 7.5e-24 114.8 181 42.0
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.5e-24 114.8 145 48.3
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.3e-23 114.0 178 42.7
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 3.7e-23 112.5 155 46.5
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 3.7e-23 112.5 160 45.0
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 4.9e-23 112.1 185 42.7
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.3e-23 111.3 162 45.7
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.1e-22 110.9 170 42.9
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 5.4e-22 108.6 190 38.9
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 5.4e-22 108.6 157 43.9
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 7.0e-22 108.2 190 38.9
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 7.0e-22 108.2 115 53.0
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 9.2e-22 107.8 165 40.6
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 1.2e-21 107.5 164 44.5
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.2e-21 107.5 157 44.6
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.7e-21 106.3 150 45.3
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.3e-20 104.0 168 43.5
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.7e-20 103.6 106 50.0
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.7e-20 103.6 106 50.0
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.3e-20 103.2 98 58.2
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.3e-20 103.2 98 58.2
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 3.0e-20 102.8 158 43.7
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 5.0e-20 102.1 114 50.0
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 6.6e-20 101.7 126 45.2
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.5e-19 99.8 103 50.5
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 3.3e-19 99.4 156 43.6
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 4.3e-19 99.0 152 44.1
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 5.6e-19 98.6 130 49.2
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 7.3e-19 98.2 115 48.7
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 7.3e-19 98.2 90 54.4
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.2e-18 97.4 110 49.1
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 3.6e-18 95.9 100 52.0
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 3.6e-18 95.9 110 50.9
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 3.6e-18 95.9 159 41.5
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 6.2e-18 95.1 162 41.4
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.1e-17 94.4 116 46.6
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 1.4e-17 94.0 100 51.0
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.4e-17 94.0 191 36.6
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 6.8e-17 91.7 110 54.5
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 2.6e-16 89.7 114 46.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 3.4e-16 89.4 151 41.7
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.5e-16 88.2 135 44.4
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 7.5e-16 88.2 112 50.9
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 9.8e-16 87.8 110 49.1
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.3e-15 87.4 110 50.0
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.7e-15 87.0 76 56.6
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.7e-15 87.0 153 39.9
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 2.9e-15 86.3 116 45.7
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 3.2e-14 82.8 90 48.9
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 3.2e-14 82.8 110 47.3
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 5.4e-14 82.0 96 46.9
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 7.1e-14 81.6 154 40.9
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 1.2e-13 80.9 104 49.0
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 2.1e-13 80.1 106 47.2
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 1.0e-12 77.8 94 46.8
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.7e-12 77.0 99 44.4
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.9e-12 75.9 56 67.9
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 5.1e-12 75.5 108 41.7
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.1e-12 75.5 108 43.5
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 6.6e-12 75.1 99 46.5
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 8.6e-12 74.7 108 40.7
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 8.6e-12 74.7 108 40.7
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 8.6e-12 74.7 97 46.4
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.1e-11 74.3 108 40.7
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.5e-11 73.9 96 42.7
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 1.5e-11 73.9 108 40.7
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 1.9e-11 73.6 98 45.9
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 2.5e-11 73.2 108 40.7
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.3e-11 72.8 108 38.9
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 3.3e-11 72.8 98 42.9
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 4.3e-11 72.4 102 47.1
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 5.6e-11 72.0 108 38.0
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 7.3e-11 71.6 102 47.1
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 7.3e-11 71.6 102 47.1
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 7.3e-11 71.6 144 41.7
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 9.5e-11 71.2 149 36.2
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.2e-10 70.9 108 39.8
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-10 70.5 103 43.7
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-10 70.5 103 43.7
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 1.6e-10 70.5 103 43.7
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 1.6e-10 70.5 103 43.7
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.6e-10 70.5 103 43.7
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 2.1e-10 70.1 108 38.9
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.1e-10 70.1 108 39.8
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 2.8e-10 69.7 108 38.0
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.8e-10 69.7 108 38.0
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 8.1e-10 68.2 102 44.1
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 8.1e-10 68.2 102 44.1
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 8.1e-10 68.2 101 41.6
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 3.1e-09 66.2 102 44.1
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.1e-09 66.2 101 43.6
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.1e-09 66.2 147 38.1
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 4.0e-09 65.9 89 44.9
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 5.2e-09 65.5 95 41.1
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 6.8e-09 65.1 162 34.6
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 6.8e-09 65.1 101 40.6
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.2e-08 64.3 101 38.6
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.2e-08 64.3 164 31.1
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 2.6e-08 63.2 107 40.2
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 4.4e-08 62.4 176 33.5
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 5.8e-08 62.0 102 41.2
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 5.8e-08 62.0 136 33.8
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.6e-08 61.6 41 75.6
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.3e-07 60.8 94 39.4
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 1.3e-07 60.8 92 37.0
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.7e-07 60.5 95 37.9
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 2.2e-07 60.1 108 38.9
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.2e-07 60.1 109 36.7
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 4.9e-07 58.9 93 38.7
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 4.9e-07 58.9 103 35.0
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 6.4e-07 58.5 96 39.6
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 8.4e-07 58.2 92 34.8
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-06 57.8 101 39.6
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.1e-06 57.8 109 35.8
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.4e-06 57.4 92 34.8
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.4e-06 57.4 93 38.7
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.4e-06 57.4 106 35.8
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 1.9e-06 57.0 113 38.1
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 2.4e-06 56.6 125 35.2
HPP92_012077 Vanilla planifolia HOM05D005673 ORTHO05D037019 2.4e-06 56.6 94 38.3
CDE04G1684 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 3.2e-06 56.2 95 38.9
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 3.2e-06 56.2 93 34.4
Mapoly0169s0020 Marchantia polymorpha HOM05D003662 ORTHO05D001824 3.2e-06 56.2 110 40.0
SMO171G0055 Selaginella moellendorffii HOM05D003662 ORTHO05D001824 3.2e-06 56.2 92 39.1
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 4.1e-06 55.8 97 34.0
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 4.1e-06 55.8 128 34.4
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 5.4e-06 55.5 100 36.0
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 5.4e-06 55.5 96 32.3
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 7.1e-06 55.1 71 45.1
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 7.1e-06 55.1 93 37.6
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 9.2e-06 54.7 99 37.4
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 9.2e-06 54.7 95 32.6


User provided reference genes

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