Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.6e-87 325.5 180 100.0
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 3.4e-26 122.5 89 74.2
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-24 117.1 93 69.9
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 5.4e-24 115.2 90 70.0
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 1.2e-23 114.0 90 68.9
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.6e-23 113.6 90 68.9
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 1.6e-23 113.6 90 68.9
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 2.7e-23 112.8 90 67.8
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.7e-23 112.8 90 68.9
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 5.9e-23 111.7 90 67.8
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 7.8e-23 111.3 88 70.5
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 1.0e-22 110.9 90 66.7
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 1.3e-22 110.5 90 66.7
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 1.7e-22 110.2 90 65.6
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 1.7e-22 110.2 120 53.3
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 2.3e-22 109.8 90 64.4
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 2.3e-22 109.8 90 65.6
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-22 109.8 122 54.1
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.3e-22 109.8 90 65.6
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 2.3e-22 109.8 90 65.6
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 64.4
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 65.6
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 2.9e-22 109.4 90 66.7
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 3.8e-22 109.0 135 48.9
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 3.8e-22 109.0 135 48.9
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 3.8e-22 109.0 90 65.6
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 3.8e-22 109.0 89 66.3
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 5.0e-22 108.6 90 64.4
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 5.0e-22 108.6 90 64.4
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 5.0e-22 108.6 90 64.4
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 63.3
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 6.6e-22 108.2 90 64.4
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 8.6e-22 107.8 90 65.6
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 8.6e-22 107.8 90 63.3
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 1.1e-21 107.5 90 62.2
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 1.1e-21 107.5 90 64.4
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 1.9e-21 106.7 90 62.2
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 1.9e-21 106.7 90 62.2
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.5e-21 106.3 90 63.3
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 3.3e-21 105.9 90 63.3
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 3.3e-21 105.9 90 64.4
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 4.3e-21 105.5 90 62.2
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 4.3e-21 105.5 123 53.7
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 63.3
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 63.3
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 62.2
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 62.2
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 63.3
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 5.6e-21 105.1 90 63.3
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 5.6e-21 105.1 117 52.1
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 63.3
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 62.2
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 62.2
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 63.3
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 63.3
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 62.2
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 62.2
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 63.3
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 7.3e-21 104.8 90 63.3
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 9.5e-21 104.4 108 55.6
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 9.5e-21 104.4 90 62.2
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 1.2e-20 104.0 90 61.1
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 1.6e-20 103.6 89 64.0
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 2.1e-20 103.2 90 61.1
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 2.1e-20 103.2 90 61.1
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 2.1e-20 103.2 90 61.1
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 2.1e-20 103.2 136 47.1
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 2.1e-20 103.2 90 62.2
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 61.1
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 2.8e-20 102.8 90 62.2
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 3.6e-20 102.4 90 61.1
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 3.6e-20 102.4 90 61.1
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 3.6e-20 102.4 90 62.2
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 3.6e-20 102.4 90 62.2
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 8.0e-20 101.3 90 61.1
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 8.0e-20 101.3 90 61.1
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 8.0e-20 101.3 104 53.8
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 1.0e-19 100.9 95 57.9
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 1.0e-19 100.9 90 61.1
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 1.8e-19 100.1 88 61.4
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 1.8e-19 100.1 88 61.4
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 1.8e-19 100.1 90 61.1
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 2.3e-19 99.8 90 60.0
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 5.2e-19 98.6 90 60.0
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 8.9e-19 97.8 90 57.8
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 8.9e-19 97.8 90 57.8
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 1.2e-18 97.4 88 61.4
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 2.6e-18 96.3 90 56.7
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 2.6e-18 96.3 90 56.7
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 4.4e-18 95.5 90 58.9
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 4.4e-18 95.5 90 58.9
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 7.5e-18 94.7 86 60.5
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 7.5e-18 94.7 88 59.1
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 7.5e-18 94.7 88 59.1
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 9.8e-18 94.4 90 56.7
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 1.3e-17 94.0 90 57.8
FvH4_7g01540 Fragaria vesca HOM05D003632 ORTHO05D005497 7.8e-15 84.7 77 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 1.0e-14 84.3 90 51.1
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 3.9e-14 82.4 90 50.0
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 3.9e-14 82.4 90 50.0
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 7.3e-13 78.2 88 46.6
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 4.7e-12 75.5 77 54.5
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.0e-12 74.7 83 56.6
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 1.4e-11 73.9 39 87.2
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.3e-11 73.2 88 53.4
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 3.1e-11 72.8 88 53.4
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 4.0e-11 72.4 39 84.6
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 5.8e-10 68.6 114 46.5
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.3e-09 64.7 49 75.5
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 4.1e-08 62.4 97 40.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.1e-08 62.4 51 68.6
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.1e-08 62.4 61 60.7
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.0e-08 61.6 70 51.4
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 1.6e-07 60.5 65 52.3
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 2.0e-07 60.1 63 46.0
SEGI_09953 Sequoiadendron giganteum HOM05D003632 ORTHO05D005497 2.7e-07 59.7 100 40.0
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.0e-06 57.8 56 58.9
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.7e-06 57.0 79 49.4
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 2.3e-06 56.6 56 57.1
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-06 56.6 47 66.0
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 3.9e-06 55.8 67 50.7
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 5.0e-06 55.5 50 64.0


User provided reference genes

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