Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2115 Fragaria x ananassa HOM05D003433 ORTHO05D003921 2.0e-44 182.2 99 100.0
FvH4_7g03420 Fragaria vesca HOM05D003433 ORTHO05D003921 6.1e-30 134.0 136 61.0
FAN06G2561 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.4e-29 132.9 135 60.7
FAN01G1156 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.7e-16 89.4 43 95.3
Duzib213G0833 Durio zibethinus HOM05D003433 ORTHO05D003921 8.6e-16 87.0 55 90.9
Nn1g04279 Nelumbo nucifera HOM05D003433 ORTHO05D003921 1.9e-15 85.9 55 89.1
unitig_26.g9354 Utricularia gibba HOM05D003433 ORTHO05D003921 1.9e-15 85.9 55 89.1
Sabra04G0032200 Salix brachista HOM05D003433 ORTHO05D003921 2.5e-15 85.5 55 87.3
Zm00001eb153500 Zea mays HOM05D003433 ORTHO05D003921 2.5e-15 85.5 55 87.3
BcaC04g21739 Brassica carinata HOM05D003433 ORTHO05D003921 3.3e-15 85.1 70 72.9
CDE02G2062 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 4.3e-15 84.7 55 87.3
RcHm_v2.0_Chr1g0325741 Rosa chinensis HOM05D003433 ORTHO05D003921 5.6e-15 84.3 55 89.1
Gohir.A01G059900 Gossypium hirsutum HOM05D003433 ORTHO05D003921 7.3e-15 84.0 55 87.3
Gohir.D01G046300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 7.3e-15 84.0 55 87.3
Gorai.002G065700 Gossypium raimondii HOM05D003433 ORTHO05D003921 7.3e-15 84.0 55 87.3
SalBow7G0821 Salvia bowleyana HOM05D003433 ORTHO05D003921 9.5e-15 83.6 55 85.5
SalBow7G1387 Salvia bowleyana HOM05D003433 ORTHO05D003921 9.5e-15 83.6 55 85.5
TAR629G0930 Trochodendron aralioides HOM05D003433 ORTHO05D003921 9.5e-15 83.6 53 88.7
Potri.004G051100 Populus trichocarpa HOM05D003433 ORTHO05D003921 1.2e-14 83.2 55 85.5
SEGI_29868 Sequoiadendron giganteum HOM05D003433 ORTHO05D003921 1.2e-14 83.2 55 83.6
THA.LOC104798409 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 1.2e-14 83.2 55 83.6
CSS0002242 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 1.6e-14 82.8 55 83.6
CSS0048128 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 1.6e-14 82.8 55 83.6
DCAR_006581 Daucus carota HOM05D003433 ORTHO05D003921 1.6e-14 82.8 55 83.6
TAR627G0809 Trochodendron aralioides HOM05D003433 ORTHO05D003921 1.6e-14 82.8 55 85.5
ATR0602G191 Amborella trichopoda HOM05D003433 ORTHO05D003921 2.1e-14 82.4 55 85.5
C09p28150 Brassica napus HOM05D003433 ORTHO05D003921 2.1e-14 82.4 70 70.0
Gohir.D13G152368 Gossypium hirsutum HOM05D003433 ORTHO05D003921 2.1e-14 82.4 55 83.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 2.1e-14 82.4 53 86.8
Mapoly0007s0163 Marchantia polymorpha HOM05D003433 ORTHO05D003921 2.8e-14 82.0 55 83.6
SMO228G0039 Selaginella moellendorffii HOM05D003433 ORTHO05D003921 3.6e-14 81.6 75 66.7
CDE09G0432 Ceratophyllum demersum HOM05D003433 ORTHO05D003921 4.7e-14 81.3 73 68.5
MD03G1236800 Malus domestica HOM05D003433 ORTHO05D003921 4.7e-14 81.3 53 84.9
Oeu062323.1 Olea europaea HOM05D003433 ORTHO05D003921 4.7e-14 81.3 53 84.9
Peaxi162Scf00042g00059 Petunia axillaris HOM05D003433 ORTHO05D003921 4.7e-14 81.3 55 85.5
Atru.chr2.2349 Acer truncatum HOM05D003433 ORTHO05D003921 6.2e-14 80.9 53 84.9
AagrBONN_evm.TU.Sc2ySwM_340.301 Anthoceros agrestis HOM05D003433 ORTHO05D003921 6.2e-14 80.9 55 81.8
A02p29570 Brassica napus HOM05D003433 ORTHO05D003921 6.2e-14 80.9 70 68.6
AUR62031106 Chenopodium quinoa HOM05D003433 ORTHO05D003921 6.2e-14 80.9 55 81.8
DCAR_028035 Daucus carota HOM05D003433 ORTHO05D003921 8.1e-14 80.5 56 82.1
QL05p043563 Quercus lobata HOM05D003433 ORTHO05D003921 8.1e-14 80.5 55 80.0
unitig_22.g6752 Utricularia gibba HOM05D003433 ORTHO05D003921 8.1e-14 80.5 55 81.8
FAN16G1189 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.1e-13 80.1 140 45.7
Pp3c26_450 Physcomitrium patens HOM05D003433 ORTHO05D003921 1.1e-13 80.1 55 81.8
Psat1g201440 Pisum sativum HOM05D003433 ORTHO05D003921 1.1e-13 80.1 55 80.0
Zm00001eb370860 Zea mays HOM05D003433 ORTHO05D003921 1.1e-13 80.1 75 68.0
Haze_09374 Corylus avellana HOM05D003433 ORTHO05D003921 1.4e-13 79.7 53 83.0
FAN25G2053 Fragaria x ananassa HOM05D003433 ORTHO05D003921 1.4e-13 79.7 140 45.7
RcHm_v2.0_Chr5g0009661 Rosa chinensis HOM05D003433 ORTHO05D003921 1.4e-13 79.7 52 88.5
MD10G1286800 Malus domestica HOM05D003433 ORTHO05D003921 1.8e-13 79.3 55 81.8
Medtr2g014950 Medicago truncatula HOM05D003433 ORTHO05D003921 1.8e-13 79.3 55 80.0
MBI06_g34195_MAGBIO Magnolia biondii HOM05D003433 ORTHO05D003921 2.3e-13 79.0 55 81.8
TAR487G0004 Trochodendron aralioides HOM05D003433 ORTHO05D003921 2.3e-13 79.0 52 82.7
Gohir.D05G346500 Gossypium hirsutum HOM05D003433 ORTHO05D003921 3.1e-13 78.6 55 83.6
Gorai.009G374400 Gossypium raimondii HOM05D003433 ORTHO05D003921 3.1e-13 78.6 55 83.6
Hund21199 Selenicereus undatus HOM05D003433 ORTHO05D003921 3.1e-13 78.6 55 78.2
Lalb_Chr03g0030831 Lupinus albus HOM05D003433 ORTHO05D003921 4.0e-13 78.2 75 62.7
TPR.G11762 Trifolium pratense HOM05D003433 ORTHO05D003921 4.0e-13 78.2 55 78.2
Zm00001eb353100 Zea mays HOM05D003433 ORTHO05D003921 4.0e-13 78.2 55 78.2
Duzib170G0437 Durio zibethinus HOM05D003433 ORTHO05D003921 5.2e-13 77.8 55 81.8
Nitab4.5_0000516g0030 Nicotiana tabacum HOM05D003433 ORTHO05D003921 5.2e-13 77.8 101 53.5
Aqoxy2G03585 Aquilegia oxysepala HOM05D003433 ORTHO05D003921 8.9e-13 77.0 56 82.1
PSO541G0211 Papaver somniferum HOM05D003433 ORTHO05D003921 8.9e-13 77.0 55 80.0
Sabra16G0246000 Salix brachista HOM05D003433 ORTHO05D003921 8.9e-13 77.0 52 80.8
Pp3c13_22350 Physcomitrium patens HOM05D003433 ORTHO05D003921 1.2e-12 76.6 55 78.2
C02p46910 Brassica napus HOM05D003433 ORTHO05D003921 1.5e-12 76.3 70 65.7
TWI38G1764 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 1.5e-12 76.3 55 78.2
Aqoxy1G02243 Aquilegia oxysepala HOM05D003433 ORTHO05D003921 3.4e-12 75.1 70 68.6
HanXRQChr17g0561771 Helianthus annuus HOM05D003433 ORTHO05D003921 3.4e-12 75.1 46 91.3
PSO675G6144 Papaver somniferum HOM05D003433 ORTHO05D003921 4.4e-12 74.7 55 78.2
CANSAT35G0946 Cannabis sativa HOM05D003433 ORTHO05D003921 5.8e-12 74.3 55 78.2
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 5.8e-12 74.3 53 81.1
Lalb_Chr15g0089601 Lupinus albus HOM05D003433 ORTHO05D003921 5.8e-12 74.3 48 85.4
MD05G1307600 Malus domestica HOM05D003433 ORTHO05D003921 5.8e-12 74.3 151 43.7
Atru.chr10.1756 Acer truncatum HOM05D003433 ORTHO05D003921 9.9e-12 73.6 55 78.2
CAN.G79.79 Capsicum annuum HOM05D003433 ORTHO05D003921 9.9e-12 73.6 46 89.1
Glyma.10G069300 Glycine max HOM05D003433 ORTHO05D003921 9.9e-12 73.6 44 90.9
Glyma.13G152372 Glycine max HOM05D003433 ORTHO05D003921 9.9e-12 73.6 44 90.9
ClCG01G023390 Citrullus lanatus HOM05D003433 ORTHO05D003921 1.3e-11 73.2 109 47.7
Nitab4.5_0002227g0060 Nicotiana tabacum HOM05D003433 ORTHO05D003921 1.3e-11 73.2 104 51.0
vmacro15947 Vaccinium macrocarpon HOM05D003433 ORTHO05D003921 2.2e-11 72.4 46 87.0
Sed0002150 Sechium edule HOM05D003433 ORTHO05D003921 2.9e-11 72.0 55 72.7
Gohir.A13G147700 Gossypium hirsutum HOM05D003433 ORTHO05D003921 3.7e-11 71.6 46 84.8
Gorai.013G172200 Gossypium raimondii HOM05D003433 ORTHO05D003921 3.7e-11 71.6 46 84.8
MSTRG.14718 Avicennia marina HOM05D003433 ORTHO05D003921 4.9e-11 71.2 55 70.9
Lj6g0016596 Lotus japonicus HOM05D003433 ORTHO05D003921 4.9e-11 71.2 45 86.7
Medtr4g088110 Medicago truncatula HOM05D003433 ORTHO05D003921 4.9e-11 71.2 46 84.8
TPR.G27870 Trifolium pratense HOM05D003433 ORTHO05D003921 4.9e-11 71.2 46 84.8
Gohir.A04G037300 Gossypium hirsutum HOM05D003433 ORTHO05D003921 6.4e-11 70.9 44 88.6
Nitab4.5_0000376g0010 Nicotiana tabacum HOM05D003433 ORTHO05D003921 6.4e-11 70.9 46 84.8
Nitab4.5_0001375g0090 Nicotiana tabacum HOM05D003433 ORTHO05D003921 6.4e-11 70.9 46 84.8
SGA_v2.0_scaffold16G07656 Striga asiatica HOM05D003433 ORTHO05D003921 6.4e-11 70.9 44 88.6
Oeu012169.1 Olea europaea HOM05D003433 ORTHO05D003921 8.3e-11 70.5 55 74.5
Rhsim02G0137600 Rhododendron simsii HOM05D003433 ORTHO05D003921 8.3e-11 70.5 46 82.6
MSTRG.15837 Avicennia marina HOM05D003433 ORTHO05D003921 1.1e-10 70.1 46 82.6
Ca_18614_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.1e-10 70.1 45 84.4
Ca_30604_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.1e-10 70.1 45 84.4
Solyc02g077410.3 Solanum lycopersicum HOM05D003433 ORTHO05D003921 1.1e-10 70.1 45 84.4
Sopen02g022310 Solanum pennellii HOM05D003433 ORTHO05D003921 1.1e-10 70.1 45 84.4
PGSC0003DMG400010727 Solanum tuberosum HOM05D003433 ORTHO05D003921 1.1e-10 70.1 45 84.4
Thecc.06G178400 Theobroma cacao HOM05D003433 ORTHO05D003921 1.1e-10 70.1 42 90.5
GSVIVG01021141001 Vitis vinifera HOM05D003433 ORTHO05D003921 1.1e-10 70.1 44 86.4
EL10Ac8g20460 Beta vulgaris HOM05D003433 ORTHO05D003921 1.4e-10 69.7 46 82.6
Ciclev10009748m.g Citrus clementina HOM05D003433 ORTHO05D003921 1.4e-10 69.7 44 86.4
Cc02_g14180 Coffea canephora HOM05D003433 ORTHO05D003921 1.4e-10 69.7 44 86.4
Duzib235G0342 Durio zibethinus HOM05D003433 ORTHO05D003921 1.4e-10 69.7 43 86.0
Lalb_Chr18g0059311 Lupinus albus HOM05D003433 ORTHO05D003921 1.4e-10 69.7 44 86.4
THA.LOC104806140 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 1.4e-10 69.7 55 74.5
MSTRG.7374 Avicennia marina HOM05D003433 ORTHO05D003921 1.9e-10 69.3 43 88.4
Duzib160G0603 Durio zibethinus HOM05D003433 ORTHO05D003921 2.4e-10 68.9 42 88.1
Migut.M01089 Erythranthe guttata HOM05D003433 ORTHO05D003921 2.4e-10 68.9 45 82.2
Potri.011G060800 Populus trichocarpa HOM05D003433 ORTHO05D003921 2.4e-10 68.9 42 88.1
SalBow8G3514 Salvia bowleyana HOM05D003433 ORTHO05D003921 2.4e-10 68.9 45 82.2
HPP92_024584 Vanilla planifolia HOM05D003433 ORTHO05D003921 2.4e-10 68.9 44 84.1
Carub.0008s0191 Capsella rubella HOM05D003433 ORTHO05D003921 3.2e-10 68.6 55 74.5
BcaC06g31504 Brassica carinata HOM05D003433 ORTHO05D003921 4.1e-10 68.2 70 62.9
Lsat_1_v5_gn_4_51640 Lactuca sativa HOM05D003433 ORTHO05D003921 4.1e-10 68.2 43 86.0
Sabra11G0041600 Salix brachista HOM05D003433 ORTHO05D003921 4.1e-10 68.2 41 90.2
Sc17g0005850 Simmondsia chinensis HOM05D003433 ORTHO05D003921 4.1e-10 68.2 46 80.4
CsaV3_6G050520 Cucumis sativus L. HOM05D003433 ORTHO05D003921 5.4e-10 67.8 43 83.7
Peaxi162Scf01018g00310 Petunia axillaris HOM05D003433 ORTHO05D003921 5.4e-10 67.8 45 82.2
Phvul.006G180300 Phaseolus vulgaris HOM05D003433 ORTHO05D003921 5.4e-10 67.8 44 81.8
RcHm_v2.0_Chr5g0031891 Rosa chinensis HOM05D003433 ORTHO05D003921 5.4e-10 67.8 44 81.8
AT5G46020 Arabidopsis thaliana HOM05D003433 ORTHO05D003921 7.1e-10 67.4 70 61.4
ECA234G4324 Erigeron canadensis HOM05D003433 ORTHO05D003921 7.1e-10 67.4 44 81.8
FvH4_3g19100 Fragaria vesca HOM05D003433 ORTHO05D003921 7.1e-10 67.4 41 87.8
FAN11G3375 Fragaria x ananassa HOM05D003433 ORTHO05D003921 7.1e-10 67.4 41 87.8
FAN16G0342 Fragaria x ananassa HOM05D003433 ORTHO05D003921 7.1e-10 67.4 41 87.8
FAN21G3894 Fragaria x ananassa HOM05D003433 ORTHO05D003921 7.1e-10 67.4 41 87.8
FAN25G3112 Fragaria x ananassa HOM05D003433 ORTHO05D003921 7.1e-10 67.4 41 87.8
Lalb_Chr20g0121441 Lupinus albus HOM05D003433 ORTHO05D003921 7.1e-10 67.4 45 80.0
AL8G12520 Arabidopsis lyrata HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
BcaB07g30864 Brassica carinata HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
BcaC03g16818 Brassica carinata HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
BcaC06g34384 Brassica carinata HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 60.0
A06p46240 Brassica napus HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 60.0
C07p29220 Brassica napus HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 60.0
BolC2t10739H Brassica oleracea HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
BolC7t43464H Brassica oleracea HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 60.0
BraA02t07983Z Brassica rapa HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
Thhalv10001058m.g Eutrema salsugineum HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
Lj4g0012011 Lotus japonicus HOM05D003433 ORTHO05D003921 9.2e-10 67.0 41 87.8
Oeu056523.1 Olea europaea HOM05D003433 ORTHO05D003921 9.2e-10 67.0 45 82.2
Psat7g117240 Pisum sativum HOM05D003433 ORTHO05D003921 9.2e-10 67.0 43 83.7
Sp2g10880 Schrenkiella parvula HOM05D003433 ORTHO05D003921 9.2e-10 67.0 70 61.4
TWI63G1023 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 9.2e-10 67.0 44 81.8
Ah.09g237750 Amaranthus hybridus HOM05D003433 ORTHO05D003921 1.2e-09 66.6 81 56.8
CARHR175920 Cardamine hirsuta HOM05D003433 ORTHO05D003921 1.2e-09 66.6 70 61.4
Ca_00377_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.2e-09 66.6 40 90.0
Ca_00401_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.2e-09 66.6 40 90.0
Gohir.A10G028800 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.2e-09 66.6 56 69.6
Gohir.D10G029200 Gossypium hirsutum HOM05D003433 ORTHO05D003921 1.2e-09 66.6 56 69.6
Gorai.011G031100 Gossypium raimondii HOM05D003433 ORTHO05D003921 1.2e-09 66.6 56 69.6
THA.LOC104812872 Tarenaya hassleriana HOM05D003433 ORTHO05D003921 1.6e-09 66.2 55 72.7
arahy.Tifrunner.gnm1.ann1.JCGS1M Arachis hypogaea HOM05D003433 ORTHO05D003921 2.1e-09 65.9 39 89.7
arahy.Tifrunner.gnm1.ann1.KS62Q6 Arachis hypogaea HOM05D003433 ORTHO05D003921 2.1e-09 65.9 39 89.7
Lalb_Chr09g0327891 Lupinus albus HOM05D003433 ORTHO05D003921 2.1e-09 65.9 59 64.4
Manes.03G104100 Manihot esculenta HOM05D003433 ORTHO05D003921 2.1e-09 65.9 41 85.4
Sed0018895 Sechium edule HOM05D003433 ORTHO05D003921 2.1e-09 65.9 134 40.3
HPP92_024631 Vanilla planifolia HOM05D002311 ORTHO05D006991 2.1e-09 65.9 42 83.3
arahy.Tifrunner.gnm1.ann1.ICFM41 Arachis hypogaea HOM05D003433 ORTHO05D003921 2.7e-09 65.5 126 42.1
Cpa.g.sc841.3 Carica papaya HOM05D003433 ORTHO05D003921 2.7e-09 65.5 39 89.7
CiPaw.12G116100 Carya illinoinensis HOM05D003433 ORTHO05D003921 2.7e-09 65.5 40 87.5
Prupe.4G054900 Prunus persica HOM05D003433 ORTHO05D003921 2.7e-09 65.5 135 40.7
arahy.Tifrunner.gnm1.ann1.6T1YLT Arachis hypogaea HOM05D003433 ORTHO05D003921 3.5e-09 65.1 128 40.6
Duzib192G0658 Durio zibethinus HOM05D003433 ORTHO05D003921 3.5e-09 65.1 58 65.5
GSVIVG01009894001 Vitis vinifera HOM05D003433 ORTHO05D003921 3.5e-09 65.1 52 73.1
Manes.16G033800 Manihot esculenta HOM05D003433 ORTHO05D003921 4.6e-09 64.7 39 87.2
Prupe.4G172600 Prunus persica HOM05D003433 ORTHO05D003921 4.6e-09 64.7 55 70.9
CSS0000003 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 6.0e-09 64.3 39 87.2
FvH4_3g08340 Fragaria vesca HOM05D003433 ORTHO05D003921 6.0e-09 64.3 129 41.9
FAN11G2340 Fragaria x ananassa HOM05D003433 ORTHO05D003921 6.0e-09 64.3 129 41.9
PGR042G3683 Punica granatum HOM05D003433 ORTHO05D003921 6.0e-09 64.3 54 68.5
MELO3C007246.2 Cucumis melo HOM05D003433 ORTHO05D003921 7.8e-09 63.9 43 79.1
CiPaw.11G165900 Carya illinoinensis HOM05D003433 ORTHO05D003921 1.0e-08 63.5 39 84.6
Thecc.07G100500 Theobroma cacao HOM05D003433 ORTHO05D003921 1.0e-08 63.5 37 91.9
TWI38G1079 Tripterygium wilfordii HOM05D003433 ORTHO05D003921 1.0e-08 63.5 46 76.1
Ciclev10016983m.g Citrus clementina HOM05D003433 ORTHO05D003921 1.7e-08 62.8 63 61.9
Hma1.2p1_1465F.1_g285360 Hydrangea macrophylla HOM05D003433 ORTHO05D003921 1.7e-08 62.8 38 86.8
Nn1g06363 Nelumbo nucifera HOM05D003433 ORTHO05D003921 8.6e-08 60.5 36 88.9
HanXRQChr16g0518571 Helianthus annuus HOM05D003433 ORTHO05D003921 2.5e-07 58.9 33 93.9
CBR_g16166 Chara braunii HOM05D003433 ORTHO05D003921 5.6e-07 57.8 41 75.6
MD11G1257500 Malus domestica HOM05D003433 ORTHO05D003921 8.1e-06 53.9 34 79.4


User provided reference genes

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