Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3487.6 1760 100.0
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3355.5 1760 96.4
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3334.3 1760 95.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3330.8 1777 95.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 3275.0 1760 94.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2755.7 1493 94.6
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1906.0 1781 59.9
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1858.6 1850 57.4
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1653.6 1115 80.2
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1570.1 1815 50.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1567.0 1712 52.3
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1539.2 1806 50.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1442.6 1787 49.0
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1372.5 1781 46.9
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1348.6 1776 46.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1345.9 1794 45.9
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1342.8 1773 46.5
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1315.1 1789 46.2
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1306.2 1773 45.7
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1286.2 1796 45.3
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1278.5 1771 45.3
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1247.3 1594 47.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1232.2 1799 43.6
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1209.9 1797 43.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1205.7 1769 44.2
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1204.5 1769 44.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1200.7 1749 44.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1189.9 1808 43.0
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1189.9 1776 42.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1170.2 1795 42.3
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1160.6 634 90.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1135.6 1820 41.1
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1132.1 1728 41.7
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1132.1 1728 41.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1131.3 1776 40.8
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1117.8 1385 47.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1094.7 1763 40.6
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1087.0 1817 40.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1082.0 1777 40.3
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 0.0e+00 1077.4 1753 41.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 0.0e+00 1075.8 1761 40.1
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.2e-311 1073.9 1823 40.6
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.2e-311 1073.5 1760 40.2
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 3.6e-306 1055.8 1799 40.4
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 2.4e-302 1043.1 1756 39.2
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.6e-298 1029.2 1258 45.6
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 6.1e-298 1028.5 1796 39.6
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 8.0e-290 1001.5 2127 35.0
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 2.2e-287 993.4 1807 38.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.1e-286 989.2 1684 40.1
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 7.0e-286 988.4 1278 45.0
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 9.5e-283 978.0 1260 44.4
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 2.1e-282 976.9 1803 38.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 7.5e-280 968.4 1802 38.0
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.2e-274 951.0 1758 38.3
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 2.1e-274 950.3 1757 38.2
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 5.6e-267 925.6 1731 37.4
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 4.7e-266 922.5 1328 43.2
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 6.8e-265 918.7 1667 37.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 4.4e-264 916.0 1771 36.8
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 4.4e-264 916.0 1797 36.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 4.9e-263 912.5 1790 36.4
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 6.0e-261 905.6 1896 35.1
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.0e-260 903.3 1793 36.1
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.2e-255 887.1 1281 41.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 2.5e-251 873.6 815 56.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.6e-250 869.8 1825 36.4
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.4e-248 862.8 432 97.7
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.8e-247 859.8 1790 36.5
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 3.3e-243 846.7 1908 34.4
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 4.5e-240 836.3 1759 36.3
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.4e-238 830.5 1747 35.9
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 6.0e-237 825.9 1852 34.8
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.5e-235 821.2 1771 35.8
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.5e-235 820.5 1720 36.0
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 2.1e-234 817.4 1849 35.5
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 3.7e-234 816.6 1760 35.7
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 3.1e-233 813.5 1755 36.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.2e-232 811.6 1770 36.1
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.6e-232 810.4 1752 35.7
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 7.6e-232 808.9 1756 35.3
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.0e-231 808.5 1754 35.3
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 2.2e-231 807.4 1768 35.7
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 4.9e-231 806.2 911 46.9
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 5.1e-228 796.2 1803 33.9
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.5e-227 794.7 1764 34.5
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.4e-222 778.1 1300 38.7
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 5.9e-216 756.1 1766 33.5
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 9.7e-203 712.2 760 49.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.1e-198 698.7 1795 32.6
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.5e-190 671.8 1813 31.9
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.5e-190 671.0 663 54.0
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 9.4e-190 669.1 692 50.7
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.8e-180 638.3 1881 29.9
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.3e-167 594.7 1407 34.9
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 5.2e-164 583.6 1310 33.1
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.3e-159 568.9 1289 32.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.9e-130 471.5 909 34.0
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.4e-108 399.4 1233 31.6
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.5e-99 369.4 643 37.0
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.4e-92 346.3 662 36.3
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 2.2e-90 339.0 243 80.7
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 2.0e-86 325.9 616 36.2
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 5.7e-86 324.3 904 28.3
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.6e-83 315.5 851 33.8
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.2e-78 300.1 454 35.9
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.3e-71 275.8 681 37.0
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.0e-70 272.7 537 32.4
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 5.7e-70 271.2 838 27.3
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 6.5e-66 257.7 854 28.5
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 5.0e-58 231.5 667 29.4
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 1.4e-55 223.4 1196 24.5
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.5e-49 202.6 773 29.5
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 8.3e-37 161.0 414 35.3
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 3.9e-34 152.1 435 33.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.3e-33 147.9 131 51.9
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.1e-31 144.1 421 33.7
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 7.8e-27 127.9 127 48.8
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 9.3e-20 104.4 363 34.4
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.5e-19 102.4 513 27.7
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.4e-15 90.5 105 44.8
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 9.9e-14 84.3 296 29.1
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 7.1e-12 78.2 310 30.3
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.2e-11 77.4 302 30.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 6.0e-11 75.1 59 64.4
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 8.7e-10 71.2 49 57.1
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.1e-07 62.8 118 36.4


User provided reference genes

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