Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.0e-191 673.3 351 100.0
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.4e-184 648.3 349 98.0
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 1.4e-153 546.6 350 85.1
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 9.2e-137 490.7 263 98.5
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 6.6e-135 484.6 279 92.1
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 3.6e-133 478.8 279 91.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 6.1e-133 478.0 279 91.0
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 8.0e-133 477.6 279 90.7
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 3.4e-115 419.1 275 82.5
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 2.2e-74 283.5 275 64.7
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 1.4e-73 280.8 278 62.6
FvH4_c21g00040 Fragaria vesca HOM05D000564 ORTHO05D008955 1.0e-66 258.1 281 57.3
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 4.8e-53 212.6 284 51.4
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 1.4e-52 211.1 284 51.4
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.0e-47 194.9 284 51.1
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 9.7e-46 188.3 292 48.6
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.2e-43 181.4 282 47.9
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 4.5e-43 179.5 286 45.1
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 3.8e-42 176.4 283 47.3
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 4.2e-41 172.9 289 45.7
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 7.2e-41 172.2 345 40.0
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.6e-40 171.0 288 46.5
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 4.7e-40 169.5 329 43.8
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.0e-39 166.8 301 41.5
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 3.0e-39 166.8 301 42.5
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-38 164.9 287 44.3
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 1.2e-38 164.9 287 44.3
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 5.7e-38 162.5 275 44.0
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 7.5e-38 162.2 308 43.5
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 8.3e-37 158.7 296 42.9
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 2.4e-36 157.1 280 46.1
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 7.0e-36 155.6 292 41.8
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.2e-35 154.8 279 42.7
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 2.0e-35 154.1 276 42.0
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 3.5e-35 153.3 291 41.6
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 4.5e-35 152.9 285 43.2
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 5.0e-34 149.4 286 43.4
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 9.4e-33 145.2 347 36.6
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 9.4e-33 145.2 287 40.8
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.7e-32 143.7 319 39.2
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 4.7e-32 142.9 288 41.3
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 4.7e-32 142.9 292 42.8
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 8.0e-32 142.1 299 40.5
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 8.0e-32 142.1 319 38.9
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.8e-31 141.0 280 38.2
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 3.0e-31 140.2 275 41.1
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.0e-31 140.2 290 40.0
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 9.8e-30 135.2 296 40.5
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 3.7e-29 133.3 276 40.2
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 4.9e-29 132.9 306 37.9
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 4.9e-29 132.9 84 84.5
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 6.3e-29 132.5 272 40.8
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.8e-28 131.0 272 40.4
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 5.4e-28 129.4 125 58.4
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 9.1e-28 128.6 293 38.6
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 2.7e-27 127.1 266 40.2
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 1.7e-26 124.4 271 41.0
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 5.0e-26 122.9 279 39.4
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 5.0e-26 122.9 308 35.1
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 8.6e-26 122.1 247 42.5
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 8.6e-26 122.1 319 36.7
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 1.5e-25 121.3 319 37.6
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 2.1e-24 117.5 158 46.8
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.0e-23 115.2 278 38.1
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 1.8e-23 114.4 318 36.5
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 4.0e-23 113.2 291 37.8
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 5.2e-23 112.8 276 37.7
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 6.8e-23 112.5 296 38.5
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 6.8e-23 112.5 277 38.6
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 8.9e-23 112.1 274 37.6
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 2.6e-22 110.5 327 33.3
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 4.4e-22 109.8 242 39.3
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 3.7e-21 106.7 299 34.4
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 7.0e-20 102.4 302 34.1
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 7.0e-20 102.4 301 34.9
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 7.8e-19 99.0 279 35.5
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 3.3e-17 93.6 288 35.1
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 3.1e-15 87.0 250 36.4
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 5.8e-14 82.8 295 34.2
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 8.3e-13 79.0 302 32.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.4e-12 78.2 230 34.8
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.9e-12 77.8 302 32.1
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 4.1e-12 76.6 79 58.2
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 4.1e-12 76.6 79 58.2
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 8.6e-10 68.9 294 29.9
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.9e-09 67.8 280 33.6
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.2e-08 65.1 280 33.6
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 4.0e-07 60.1 252 33.7
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 8.9e-07 58.9 46 65.2
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 5.8e-06 56.2 285 29.5
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 9.8e-06 55.5 262 28.6
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 9.8e-06 55.5 239 30.1


User provided reference genes

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