Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-229 798.9 396 100.0
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-100 369.0 187 98.9
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.0e-99 365.5 184 98.9
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.8e-96 355.1 179 98.3
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.8e-87 325.5 208 83.2
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-86 323.6 208 82.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-82 310.8 208 80.3
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.9e-82 310.5 208 79.8
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.3e-82 308.5 225 74.2
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.3e-82 308.5 208 79.8
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.4e-79 299.3 208 78.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 4.9e-78 295.8 212 75.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 8.9e-72 275.0 208 71.6
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 8.9e-72 275.0 208 70.7
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.5e-71 274.2 208 72.6
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 3.3e-66 256.5 143 90.9
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.5e-66 255.0 135 94.8
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-65 253.4 135 94.1
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 3.1e-64 250.0 135 93.3
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 7.3e-58 228.8 208 57.2
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 6.9e-56 222.2 208 56.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 2.6e-55 220.3 208 55.3
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 4.4e-55 219.5 208 56.2
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.3e-54 218.0 208 55.8
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 2.2e-54 217.2 208 56.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 2.9e-54 216.9 208 57.2
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 2.9e-54 216.9 224 54.5
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 4.9e-54 216.1 224 54.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 1.1e-53 214.9 208 57.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.9e-53 214.2 209 56.5
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 2.4e-53 213.8 208 53.4
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 2.4e-53 213.8 207 54.1
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 3.2e-53 213.4 208 53.4
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 4.2e-53 213.0 224 52.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 5.4e-53 212.6 208 56.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 5.4e-53 212.6 208 54.3
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 7.1e-53 212.2 208 53.4
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 7.1e-53 212.2 207 55.1
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.2e-52 211.5 209 55.5
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.2e-52 211.5 208 53.8
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.6e-52 211.1 207 53.6
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.1e-52 210.7 209 56.5
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 4.6e-52 209.5 208 54.3
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 4.6e-52 209.5 209 55.0
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.0e-52 209.1 224 53.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.7e-51 207.6 207 52.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 3.9e-51 206.5 227 54.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 5.1e-51 206.1 224 52.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.3e-50 203.4 208 51.9
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.3e-50 203.4 208 51.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 2.1e-49 200.7 208 51.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 3.6e-49 199.9 209 53.6
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.1e-48 198.4 209 52.6
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-48 197.2 101 95.0
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 2.4e-48 197.2 208 51.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 5.3e-48 196.1 208 53.4
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 1.2e-47 194.9 208 52.9
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.5e-47 194.5 208 53.4
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 3.4e-47 193.4 256 46.5
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 2.2e-46 190.7 208 53.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 2.2e-46 190.7 208 53.4
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 2.2e-46 190.7 256 46.9
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 4.9e-46 189.5 209 50.2
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 8.4e-46 188.7 208 50.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 8.4e-46 188.7 256 46.5
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 1.9e-45 187.6 209 51.2
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.9e-45 187.6 209 50.2
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 3.2e-45 186.8 208 51.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 4.2e-45 186.4 208 51.4
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 5.4e-45 186.0 209 49.3
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 7.1e-45 185.7 214 50.5
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 1.2e-44 184.9 214 50.5
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.1e-44 184.1 256 45.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 3.5e-44 183.3 208 51.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 3.5e-44 183.3 209 49.3
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.6e-44 183.0 256 45.3
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 4.6e-44 183.0 256 45.3
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 6.0e-44 182.6 208 49.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 7.9e-44 182.2 208 50.0
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-43 181.4 209 48.8
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 1.3e-43 181.4 218 49.1
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 1.3e-43 181.4 208 50.5
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 1.8e-43 181.0 208 50.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.0e-43 180.3 246 43.9
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 3.9e-43 179.9 208 49.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.9e-43 179.9 256 44.9
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 6.7e-43 179.1 208 47.6
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 8.7e-43 178.7 208 46.6
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 1.1e-42 178.3 208 50.0
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 1.1e-42 178.3 208 50.0
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.1e-42 178.3 208 47.6
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 1.5e-42 177.9 224 46.9
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 1.5e-42 177.9 208 49.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.5e-42 177.2 208 48.1
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 3.3e-42 176.8 197 49.2
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 3.3e-42 176.8 208 49.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 3.3e-42 176.8 255 43.9
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 5.6e-42 176.0 208 50.0
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 5.6e-42 176.0 208 46.6
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 5.6e-42 176.0 208 50.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 5.6e-42 176.0 208 47.6
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 7.4e-42 175.6 208 46.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 7.4e-42 175.6 211 49.3
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 9.6e-42 175.3 209 49.3
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 1.3e-41 174.9 208 46.6
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.1e-41 174.1 235 46.4
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 1.4e-40 171.4 203 49.8
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.8e-40 171.0 224 44.2
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 1.2e-39 168.3 209 49.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 2.0e-39 167.5 213 46.5
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 8.4e-38 162.2 211 46.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 1.4e-37 161.4 211 45.0
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 2.5e-37 160.6 220 45.5
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 4.2e-37 159.8 224 43.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 4.2e-37 159.8 224 43.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 3.7e-33 146.7 224 41.1
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.4e-32 144.1 224 37.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.5e-31 141.4 208 44.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 5.8e-31 139.4 208 39.4
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.2e-29 133.7 214 39.3
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-26 124.4 196 42.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 3.3e-26 123.6 231 34.2
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-21 108.2 199 34.7
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.6e-20 103.6 92 57.6
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 5.3e-16 89.7 223 32.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 7.9e-12 75.9 76 44.7
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 5.0e-06 56.6 122 29.5


User provided reference genes

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