Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.6e-227 790.0 413 100.0
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.3e-218 760.4 416 96.2
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-217 758.8 416 96.2
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 2.6e-215 751.9 416 96.2
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-215 751.9 416 96.2
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.9e-214 747.7 416 95.7
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.8e-209 731.9 413 94.4
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.8e-190 668.3 416 86.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.9e-97 359.8 423 53.9
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.7e-86 323.9 420 50.5
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.0e-82 310.5 424 50.9
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.3e-78 297.0 427 49.2
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 3.4e-74 283.1 424 48.8
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 6.4e-73 278.9 427 47.1
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 5.3e-67 259.2 435 43.7
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 3.5e-63 246.5 422 43.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.3e-61 240.0 422 42.7
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.3e-60 238.0 422 42.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.3e-60 238.0 428 40.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.8e-59 234.2 418 41.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.4e-59 233.8 418 40.9
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 5.5e-56 222.6 420 40.7
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.0e-54 218.4 430 39.3
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 9.7e-53 211.8 433 40.0
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.2e-52 210.7 419 40.6
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.8e-52 210.3 425 40.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 6.3e-52 209.1 428 39.3
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.4e-51 207.2 397 38.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 5.3e-51 206.1 418 40.9
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.0e-49 201.8 424 38.0
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.7e-49 201.1 417 39.8
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 8.5e-49 198.7 415 38.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.9e-48 197.6 423 38.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 5.5e-48 196.1 415 39.0
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 5.5e-48 196.1 427 38.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 9.4e-48 195.3 421 37.1
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.1e-47 194.1 420 38.1
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.0e-46 191.8 416 37.7
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.0e-46 191.8 411 38.0
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 3.0e-46 190.3 442 36.9
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 5.1e-46 189.5 421 36.6
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 3.3e-45 186.8 428 38.8
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 3.3e-45 186.8 432 38.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 7.4e-45 185.7 414 36.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.8e-44 183.7 417 38.4
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 3.7e-44 183.3 419 37.9
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 6.3e-44 182.6 415 37.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 8.2e-44 182.2 455 34.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.1e-43 181.8 421 37.8
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.4e-43 181.4 411 37.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.4e-43 180.6 411 36.5
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.9e-43 179.1 426 35.9
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 9.1e-43 178.7 427 36.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.5e-42 177.9 450 34.0
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.9e-42 176.0 411 36.3
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 7.7e-42 175.6 416 36.3
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-40 171.8 468 35.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.4e-40 171.4 434 35.3
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.4e-40 171.4 382 37.2
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.9e-40 171.0 421 35.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.5e-40 170.6 416 36.5
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.2e-40 170.2 418 36.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 4.2e-40 169.9 417 36.5
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 4.7e-39 166.4 426 35.4
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.7e-39 166.4 445 34.8
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.5e-37 161.4 422 35.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 8.2e-36 155.6 444 33.3
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.1e-35 153.3 421 34.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 6.5e-33 146.0 411 33.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 8.5e-33 145.6 319 38.9
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.1e-32 145.2 394 34.5
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.3e-29 133.7 423 33.1
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 7.5e-29 132.5 345 34.8
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.8e-28 130.6 347 34.3
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-27 127.1 415 31.8
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 5.3e-27 126.3 432 29.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 5.3e-27 126.3 416 32.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 5.3e-27 126.3 415 29.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 7.0e-27 125.9 398 33.2
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 7.0e-27 125.9 139 49.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.2e-26 125.2 411 31.6
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 5.9e-26 122.9 416 30.5
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 5.9e-26 122.9 445 30.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.0e-25 122.1 428 31.3
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.3e-25 121.7 425 30.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.9e-25 120.6 415 30.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.5e-25 119.4 418 29.4
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.5e-24 118.2 415 30.4
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.9e-24 117.9 417 31.2
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.5e-24 117.5 420 29.8
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.2e-24 117.1 415 30.6
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.5e-24 116.3 418 29.7
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 7.2e-24 115.9 423 30.7
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.2e-24 115.9 380 31.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.2e-24 115.9 380 31.6
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 7.2e-24 115.9 415 32.3
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.7e-23 114.0 120 50.8
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.7e-23 114.0 346 32.4
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.7e-23 114.0 364 33.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.7e-23 113.2 434 27.9
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 6.1e-23 112.8 323 34.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 8.0e-23 112.5 353 33.4
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.4e-22 111.7 360 32.2
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.8e-22 111.3 417 29.3
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.0e-22 110.2 320 34.7
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 8.8e-22 109.0 424 28.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.6e-21 107.5 419 30.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.6e-21 107.5 419 30.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.6e-21 107.5 419 30.1
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 4.8e-20 103.2 432 29.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.2e-18 98.6 442 28.5
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.6e-18 98.2 98 56.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 3.8e-17 93.6 421 27.8
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 7.2e-16 89.4 415 27.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.2e-15 88.6 378 29.9
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.6e-15 88.2 332 30.7
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.0e-14 84.0 142 43.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.8e-14 82.8 152 40.1
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-13 82.0 434 26.7
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 5.7e-13 79.7 452 27.2
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.3e-12 78.6 415 25.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.9e-12 76.6 414 26.8
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.0e-11 72.8 359 27.9
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.6e-10 71.6 306 30.4
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.1e-08 65.5 458 24.2
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.9e-08 64.7 51 64.7
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.9e-08 64.7 209 31.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.3e-08 63.5 434 25.8
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.6e-07 61.6 434 25.6
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.6e-07 61.6 146 32.9
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 2.8e-07 60.8 32 87.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.1e-07 59.7 122 39.3
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-06 58.5 434 25.8
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-06 57.8 434 25.3


User provided reference genes

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