Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.1e-182 641.7 336 100.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.1e-175 619.0 331 97.3
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.1e-159 565.8 289 99.0
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.1e-159 565.8 289 99.0
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-151 539.7 288 95.8
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 6.1e-146 521.2 287 92.7
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.7e-130 469.2 301 79.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-124 450.3 301 76.7
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 7.2e-123 444.5 301 76.1
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.2e-104 384.0 300 68.7
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 2.2e-103 379.8 309 68.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 7.8e-101 371.3 323 63.5
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 2.9e-100 369.4 305 65.2
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 3.9e-100 369.0 316 63.9
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 3.3e-99 365.9 320 63.4
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 4.3e-99 365.5 301 65.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 4.3e-99 365.5 304 64.5
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.3e-99 365.5 315 63.8
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 9.5e-99 364.4 312 64.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.6e-98 363.6 312 62.5
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.6e-98 363.6 219 81.7
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.1e-98 363.2 315 62.5
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 3.6e-98 362.5 314 63.1
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 4.7e-98 362.1 316 63.6
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.0e-97 359.0 308 64.3
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 6.8e-97 358.2 316 61.1
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 8.9e-97 357.8 291 66.7
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 8.9e-97 357.8 314 64.6
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 8.9e-97 357.8 316 63.3
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.5e-96 357.1 313 63.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 5.8e-96 355.1 297 66.0
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 7.5e-96 354.8 218 79.8
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 2.2e-95 353.2 287 64.5
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 3.7e-95 352.4 243 72.0
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 6.4e-95 351.7 314 61.1
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 6.4e-95 351.7 319 59.6
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.2e-94 349.4 311 62.7
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 4.1e-94 349.0 303 63.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 5.4e-94 348.6 310 62.3
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 9.2e-94 347.8 248 69.8
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.6e-93 347.1 314 59.9
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.6e-93 347.1 220 77.3
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 2.0e-93 346.7 303 61.1
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 3.5e-93 345.9 253 69.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 7.8e-93 344.7 291 61.5
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.0e-92 344.4 301 62.8
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 2.3e-92 343.2 309 61.5
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 3.9e-92 342.4 313 59.7
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 5.0e-92 342.0 320 58.8
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 8.6e-92 341.3 308 60.1
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.1e-91 340.9 299 60.5
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-91 340.9 300 61.3
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 2.5e-91 339.7 312 60.6
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 3.3e-91 339.3 306 60.5
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 4.3e-91 339.0 308 61.0
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 5.6e-91 338.6 316 59.8
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 7.3e-91 338.2 300 62.3
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 7.3e-91 338.2 219 76.7
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 9.5e-91 337.8 306 61.4
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.2e-90 337.4 288 62.5
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 2.8e-90 336.3 306 60.5
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.8e-90 336.3 301 61.8
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.6e-90 335.9 302 60.9
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 3.6e-90 335.9 309 60.5
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 3.6e-90 335.9 297 62.0
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 4.7e-90 335.5 302 60.9
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 4.7e-90 335.5 295 61.0
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 4.7e-90 335.5 295 61.0
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.2e-90 335.1 317 59.3
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 6.2e-90 335.1 290 63.1
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 6.2e-90 335.1 202 81.2
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.1e-89 334.3 303 60.4
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 1.1e-89 334.3 335 57.0
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.4e-89 334.0 269 63.6
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.3e-89 333.2 300 60.7
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 4.0e-89 332.4 220 73.2
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 5.2e-89 332.0 312 57.7
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 5.2e-89 332.0 277 62.1
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.2e-88 330.9 325 58.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.5e-88 330.5 294 60.9
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.0e-88 330.1 308 58.8
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.6e-88 329.7 288 61.1
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 2.6e-88 329.7 290 62.1
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.4e-88 329.3 339 56.6
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.8e-88 328.6 267 64.0
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 5.8e-88 328.6 316 58.2
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 9.8e-88 327.8 310 59.7
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.4e-86 323.9 218 74.8
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.4e-86 323.9 220 72.3
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 1.9e-86 323.6 243 68.3
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.2e-86 322.8 279 63.8
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 7.0e-86 321.6 217 72.4
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 1.2e-85 320.9 301 58.5
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.1e-85 320.1 237 66.7
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 4.6e-85 318.9 229 68.1
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.3e-84 317.4 300 59.0
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.3e-84 317.4 225 69.8
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.3e-84 316.6 300 59.0
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 3.0e-84 316.2 211 73.5
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 4.3e-83 312.4 291 58.8
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 5.6e-83 312.0 218 71.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-82 310.8 321 55.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.6e-82 310.5 255 60.0
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 4.7e-82 308.9 310 57.4
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 8.1e-82 308.1 244 61.1
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 6.8e-81 305.1 293 57.0
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 6.4e-79 298.5 289 58.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.2e-77 294.3 304 56.6
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.1e-75 287.7 289 57.8
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.2e-74 284.3 249 57.0
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.9e-71 273.1 229 62.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 6.0e-69 265.4 324 51.5
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 7.8e-69 265.0 206 58.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 9.6e-67 258.1 210 57.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.1e-65 254.6 226 61.1
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.9e-63 246.5 234 51.3
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.2e-62 242.7 202 60.9
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.2e-61 241.1 194 66.5
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 5.3e-57 225.7 192 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.0e-47 194.9 168 57.7
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 5.1e-44 182.6 110 80.0
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.1e-41 174.9 153 62.1
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 2.6e-40 170.2 161 51.6
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.6e-37 161.0 145 56.6
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 4.8e-34 149.4 83 83.1
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 9.0e-33 145.2 83 81.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-31 140.6 109 65.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 1.4e-30 137.9 207 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.5e-30 137.1 125 53.6
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.8e-26 123.6 83 71.1
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-25 120.2 68 80.9
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 3.1e-25 120.2 142 38.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 8.5e-23 112.1 198 30.8
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.7e-18 97.8 68 70.6
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 9.1e-17 92.0 135 47.4
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-15 88.6 57 71.9
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 8.8e-12 75.5 83 50.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.5e-11 74.7 130 43.8
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.4e-09 67.4 159 34.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-08 64.7 37 83.8
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 1.3e-07 61.6 69 49.3
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 1.7e-07 61.2 35 82.9
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 5.0e-07 59.7 31 80.6


User provided reference genes

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