Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 8.1e-143 510.4 253 100.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 5.4e-139 497.7 253 97.6
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 3.5e-138 495.0 253 97.2
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.5e-138 495.0 253 97.2
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.5e-136 489.6 253 96.4
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 8.9e-126 453.8 260 90.8
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.3e-100 370.2 257 77.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 5.7e-96 354.8 262 70.6
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 7.4e-96 354.4 261 75.1
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.3e-95 353.6 262 73.7
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.0e-93 346.3 233 75.1
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 4.5e-93 345.1 253 69.6
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 7.6e-93 344.4 229 74.7
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.0e-92 344.0 218 77.5
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.8e-92 342.0 218 77.5
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 6.5e-92 341.3 218 77.5
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.5e-92 340.9 218 77.1
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.4e-91 340.1 218 77.1
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 7.9e-90 334.3 231 71.0
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.8e-89 333.2 249 67.5
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 3.9e-89 332.0 233 71.2
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.9e-89 332.0 234 68.8
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 5.1e-89 331.6 247 66.8
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 6.7e-89 331.3 217 73.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.5e-88 330.1 257 66.5
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.5e-88 330.1 234 69.7
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 2.5e-88 329.3 225 71.6
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 4.3e-88 328.6 220 70.9
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.3e-88 328.6 218 73.9
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 7.4e-88 327.8 223 73.1
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.2e-87 326.2 218 73.4
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 2.8e-87 325.9 222 73.0
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.8e-87 325.9 223 70.4
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.8e-87 325.9 224 72.3
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 4.8e-87 325.1 220 70.5
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 4.8e-87 325.1 226 69.9
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 6.3e-87 324.7 222 71.2
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 8.2e-87 324.3 223 70.0
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.1e-86 322.4 235 67.7
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.1e-86 322.4 220 70.9
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 4.1e-86 322.0 218 71.6
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 4.1e-86 322.0 242 64.9
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 9.1e-86 320.9 218 72.5
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 7.7e-85 317.8 227 68.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.2e-84 316.2 223 69.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 3.8e-84 315.5 255 65.9
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.4e-83 313.5 218 72.5
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.4e-83 313.5 248 64.1
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.9e-83 313.2 217 71.0
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.5e-83 311.6 228 66.2
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 7.2e-83 311.2 255 62.7
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 7.2e-83 311.2 255 62.7
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 9.4e-83 310.8 220 68.2
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 9.4e-83 310.8 247 61.9
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.1e-82 309.7 244 64.3
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.6e-82 308.5 220 68.2
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 4.6e-82 308.5 225 68.4
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 6.1e-82 308.1 203 75.4
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 3.0e-81 305.8 227 65.2
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 3.0e-81 305.8 229 68.6
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 6.7e-81 304.7 247 63.2
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 8.8e-81 304.3 220 69.5
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.0e-80 303.1 257 58.0
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.6e-80 302.8 249 62.2
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 3.3e-80 302.4 204 73.0
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 5.7e-80 301.6 228 67.5
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 5.7e-80 301.6 230 67.4
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 2.2e-79 299.7 224 66.1
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.7e-79 298.9 197 71.1
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.4e-78 297.0 257 58.4
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.4e-78 297.0 218 63.8
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 4.1e-78 295.4 230 63.5
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 5.3e-78 295.0 318 50.6
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.0e-77 293.1 245 60.0
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 2.6e-77 292.7 228 64.5
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 5.9e-77 291.6 247 60.3
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 7.7e-77 291.2 249 60.2
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.7e-76 290.0 245 59.6
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 5.0e-76 288.5 197 70.6
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 5.0e-76 288.5 212 65.1
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 6.5e-76 288.1 264 55.3
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 8.5e-76 287.7 259 56.8
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 5.5e-75 285.0 224 64.3
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.2e-74 283.9 265 58.1
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.2e-74 283.9 240 57.1
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 1.2e-74 283.9 227 63.0
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.6e-74 283.5 254 56.3
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.7e-74 282.7 265 57.7
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 3.6e-74 282.3 227 63.0
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 3.6e-74 282.3 227 63.0
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.8e-73 280.0 195 68.7
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.8e-73 280.0 196 69.4
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.8e-73 280.0 293 51.2
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 3.9e-73 278.9 195 68.2
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 6.7e-73 278.1 227 62.1
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 5.7e-72 275.0 228 60.1
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.7e-71 272.3 225 60.9
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.4e-70 270.4 216 59.7
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.8e-70 270.0 165 75.8
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 2.0e-69 266.5 197 65.5
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.6e-69 266.2 296 48.3
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.5e-69 265.8 196 65.8
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 5.9e-69 265.0 216 57.9
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.3e-68 263.8 196 65.3
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.6e-66 256.9 228 57.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 4.7e-66 255.4 233 58.8
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.5e-64 250.4 229 55.0
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 9.7e-64 247.7 218 60.1
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.6e-58 230.3 216 51.4
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 1.7e-55 220.3 195 56.4
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.8e-55 219.5 217 53.9
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 8.6e-44 181.4 120 72.5
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 5.0e-36 155.6 187 40.6
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 7.3e-35 151.8 221 33.5
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 2.3e-28 130.2 150 40.7
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 3.4e-24 116.3 79 68.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.6e-21 107.5 195 33.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 2.6e-16 90.1 118 44.9


User provided reference genes

Program Settings