Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-70 268.1 136 100.0
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.1e-69 264.6 136 98.5
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 9.2e-69 263.5 136 98.5
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.6e-68 261.2 136 97.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 3.0e-67 258.5 136 97.1
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.0e-67 258.5 136 97.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 2.6e-63 245.4 136 91.9
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 8.4e-62 240.4 136 86.8
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.6e-57 226.1 137 83.9
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 6.9e-56 220.7 137 83.9
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.4e-53 213.0 136 80.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.4e-53 212.2 138 78.3
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 4.2e-53 211.5 136 77.9
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 2.1e-52 209.1 133 79.7
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 4.6e-52 208.0 136 80.1
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.0e-51 205.3 137 78.1
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.5e-50 203.0 138 76.1
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.5e-50 203.0 136 76.5
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 2.5e-50 202.2 137 77.4
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 4.3e-50 201.4 136 75.7
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 4.3e-50 201.4 136 75.7
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.6e-50 201.1 140 76.4
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 7.3e-50 200.7 136 75.0
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 2.8e-49 198.7 138 74.6
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 8.1e-49 197.2 138 73.9
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.1e-48 196.8 138 76.8
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.4e-48 196.4 136 72.8
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.4e-48 196.4 136 72.8
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.4e-48 196.4 137 76.6
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.4e-48 195.7 137 73.7
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 6.9e-48 194.1 137 73.0
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.2e-47 193.4 137 73.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.2e-47 193.4 138 76.1
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.2e-47 193.4 136 72.1
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.6e-47 192.2 140 70.0
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 2.6e-47 192.2 134 70.1
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 5.8e-47 191.0 138 72.5
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 5.8e-47 191.0 137 73.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 7.6e-47 190.7 136 69.9
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 7.6e-47 190.7 137 74.5
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 9.9e-47 190.3 142 71.8
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 9.9e-47 190.3 137 73.7
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 2.2e-46 189.1 138 71.7
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 2.9e-46 188.7 138 71.0
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.8e-46 188.3 138 73.2
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 4.9e-46 188.0 137 70.8
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 4.9e-46 188.0 136 69.1
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 6.4e-46 187.6 138 72.5
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 6.4e-46 187.6 137 70.8
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 8.4e-46 187.2 139 72.7
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.4e-46 187.2 138 73.9
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.1e-45 186.8 139 71.2
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.1e-45 186.8 143 69.9
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.1e-45 186.8 137 71.5
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.4e-45 186.4 137 67.2
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.9e-45 186.0 139 67.6
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 1.9e-45 186.0 136 68.4
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 3.2e-45 185.3 137 70.8
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 3.2e-45 185.3 137 69.3
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.2e-45 185.3 136 66.9
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 4.2e-45 184.9 136 70.6
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 5.4e-45 184.5 115 81.7
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 9.3e-45 183.7 137 71.5
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.6e-44 183.0 139 69.1
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.6e-44 183.0 141 68.8
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.1e-44 182.6 137 72.3
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.1e-44 182.6 140 67.1
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.7e-44 182.2 139 66.9
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 2.7e-44 182.2 137 68.6
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 2.7e-44 182.2 137 71.5
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 3.5e-44 181.8 140 67.1
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 3.5e-44 181.8 139 67.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 6.0e-44 181.0 137 68.6
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.3e-43 179.9 137 69.3
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.3e-43 179.1 138 68.1
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 3.0e-43 178.7 140 66.4
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 3.0e-43 178.7 140 67.1
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 6.7e-43 177.6 138 66.7
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 8.7e-43 177.2 137 67.9
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.9e-42 176.0 144 62.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 3.3e-42 175.3 106 78.3
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 4.3e-42 174.9 140 67.1
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.6e-42 174.5 139 69.1
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 7.4e-42 174.1 131 64.9
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.6e-41 172.9 139 66.9
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.6e-41 172.9 140 65.7
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.6e-41 172.9 136 68.4
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.1e-41 172.6 137 67.2
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.8e-41 172.2 141 66.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 2.8e-41 172.2 140 65.7
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 4.8e-41 171.4 137 68.6
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 8.1e-41 170.6 140 65.7
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.1e-40 170.2 141 67.4
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.1e-40 170.2 139 64.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.4e-40 169.9 104 79.8
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.8e-40 169.5 139 65.5
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.4e-40 169.1 138 65.9
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.4e-40 169.1 138 65.9
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.4e-40 169.1 138 65.9
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.4e-40 169.1 138 65.9
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 6.9e-40 167.5 136 65.4
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.2e-39 166.8 138 64.5
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.5e-39 166.4 136 63.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.5e-39 166.4 108 74.1
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.6e-39 165.6 139 64.7
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 3.4e-39 165.2 106 77.4
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 5.8e-39 164.5 139 64.7
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 7.6e-39 164.1 140 64.3
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 2.9e-38 162.2 107 76.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 4.2e-37 158.3 155 60.0
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 5.5e-37 157.9 131 64.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 7.1e-37 157.5 126 67.5
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 7.1e-37 157.5 137 61.3
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 90 85.6
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.1e-36 156.0 121 67.8
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 2.1e-36 156.0 210 48.1
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 6.7e-35 151.0 170 53.5
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 1.6e-33 146.4 145 58.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.6e-33 146.4 116 68.1
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 3.7e-33 145.2 139 59.0
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 6.9e-32 141.0 114 62.3
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 7.6e-31 137.5 89 71.9
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.2e-30 136.0 89 70.8
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 4.9e-30 134.8 130 51.5
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 5.5e-29 131.3 144 52.8
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 9.3e-29 130.6 107 68.2
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.1e-28 129.4 70 85.7
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 3.9e-27 125.2 108 64.8
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 6.7e-27 124.4 107 63.6
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.1e-26 123.6 119 57.1
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 5.7e-26 121.3 89 78.7
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 9.7e-26 120.6 89 59.6
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.0e-22 110.5 87 65.5
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.7e-22 109.8 89 55.1
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.2e-22 109.4 74 71.6
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.3e-18 95.5 87 60.9
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.8e-17 91.7 65 67.7
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 5.3e-16 88.2 69 68.1
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 40 82.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 4.4e-10 68.6 36 88.9
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 7.7e-07 57.8 162 31.5
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.0e-06 57.4 161 31.7
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.3e-06 57.0 98 32.7
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 1.3e-06 57.0 117 34.2
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 2.2e-06 56.2 105 32.4
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 5.0e-06 55.1 112 39.3
FAN19G1751 Fragaria x ananassa HOM05D002686 ORTHO05D003222 5.0e-06 55.1 131 32.8
FAN23G0852 Fragaria x ananassa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 133 32.3
FAN26G1050 Fragaria x ananassa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 133 32.3
FAN26G3337 Fragaria x ananassa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 133 32.3
FAN28G0604 Fragaria x ananassa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 133 32.3
FAN28G1135 Fragaria x ananassa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 133 32.3
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 8.5e-06 54.3 153 31.4
FvH4_1g09160 Fragaria vesca HOM05D002686 ORTHO05D003222 8.5e-06 54.3 133 32.3


User provided reference genes

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