Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-93 346.7 173 100.0
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.6e-65 251.5 244 60.7
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-53 213.8 188 66.5
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.9e-51 205.7 216 59.3
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 5.5e-50 201.4 216 58.3
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-49 199.9 215 58.1
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.5e-47 193.4 219 54.8
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 5.9e-36 154.8 219 46.6
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 1.9e-34 149.8 217 43.3
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 4.1e-29 132.1 218 40.4
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 4.1e-29 132.1 217 39.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 5.3e-29 131.7 221 39.4
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 9.1e-29 131.0 217 39.6
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.5e-28 130.2 214 39.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.5e-28 130.2 219 40.2
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.5e-28 130.2 219 39.3
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.5e-28 130.2 219 39.3
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 4.5e-28 128.6 220 37.7
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 5.9e-28 128.3 215 37.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 5.9e-28 128.3 219 38.8
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 2.9e-27 125.9 219 40.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 6.5e-27 124.8 218 38.5
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.1e-26 124.0 221 36.2
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 1.5e-26 123.6 221 38.5
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.9e-26 123.2 221 36.2
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.6e-25 120.2 221 38.5
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 2.7e-25 119.4 218 39.4
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 3.6e-25 119.0 232 34.5
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 4.7e-25 118.6 215 38.6
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 4.7e-25 118.6 215 38.6
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 4.7e-25 118.6 215 38.6
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.8e-24 116.7 215 38.1
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 1.8e-24 116.7 215 38.1
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.8e-24 116.7 221 37.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 1.8e-24 116.7 221 37.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.8e-24 116.7 214 36.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 2.3e-24 116.3 218 35.3
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 5.2e-24 115.2 215 38.1
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 6.7e-24 114.8 220 34.5
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 8.8e-24 114.4 215 37.7
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 8.8e-24 114.4 215 37.7
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 8.8e-24 114.4 219 38.4
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 8.8e-24 114.4 215 37.2
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.1e-23 114.0 221 35.7
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.1e-23 114.0 221 35.7
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.3e-23 112.5 216 33.8
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.4e-23 112.1 206 35.9
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 5.7e-23 111.7 222 39.2
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 7.5e-23 111.3 219 36.1
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 1.3e-22 110.5 217 34.6
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.7e-22 110.2 215 35.8
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 4.8e-22 108.6 218 34.9
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 2.4e-21 106.3 203 34.5
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 2.4e-21 106.3 224 33.0
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 5.3e-21 105.1 222 33.3
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 7.0e-21 104.8 218 34.4
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.2e-20 104.0 221 33.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 2.6e-20 102.8 221 34.8
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.7e-20 101.3 194 37.6
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.0e-19 100.9 212 36.3
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.9e-19 99.4 219 33.8
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 3.8e-19 99.0 223 33.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 8.5e-19 97.8 219 36.1
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 8.5e-19 97.8 188 33.5
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 1.5e-18 97.1 223 33.2
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.9e-18 96.7 216 34.7
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.2e-18 95.5 192 32.8
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.1e-17 93.2 220 34.1
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-17 92.8 46 100.0
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 6.1e-17 91.7 190 31.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 6.1e-17 91.7 203 29.6
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.4e-16 90.5 221 29.0
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.0e-16 89.4 59 71.2
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.5e-15 87.0 259 28.6
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 2.6e-15 86.3 63 65.1
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 2.6e-15 86.3 216 32.9
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 5.7e-15 85.1 215 33.0
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 7.5e-15 84.7 214 33.2
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 2.2e-14 83.2 297 26.3
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 8.3e-14 81.3 216 29.2
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 5.4e-13 78.6 57 63.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 7.0e-13 78.2 59 59.3
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 9.1e-13 77.8 231 27.7
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 9.1e-13 77.8 205 33.7
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.0e-12 76.6 218 29.8
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-11 73.6 55 70.9
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-11 73.6 55 70.9
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-11 73.6 55 70.9
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.7e-11 73.6 55 70.9
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.8e-11 72.4 221 29.9
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.0e-11 72.0 207 28.0
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 4.2e-10 68.9 213 26.3
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.2e-09 67.4 58 46.6
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.2e-09 67.4 186 30.1
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.6e-09 67.0 59 45.8
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.6e-09 67.0 79 44.3
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 2.7e-09 66.2 217 26.3
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 6.1e-09 65.1 59 47.5
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.0e-08 62.4 59 45.8
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.0e-08 62.4 59 45.8
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 4.0e-08 62.4 205 25.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.8e-08 61.6 59 52.5
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.5e-07 60.5 49 57.1
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.4e-07 59.3 59 45.8
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.8e-07 57.8 57 54.4
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 2.2e-06 56.6 59 42.4


User provided reference genes

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