Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 1.5e-66 256.1 137 100.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 1.6e-60 236.1 138 93.5
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 4.2e-45 184.9 138 79.0
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 7.9e-36 154.1 136 69.9
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 4.8e-33 144.8 138 65.9
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.7e-30 136.3 137 63.5
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 4.4e-26 121.7 136 55.1
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 3.7e-25 118.6 136 51.5
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 3.7e-25 118.6 137 54.7
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 4.8e-25 118.2 114 60.5
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 1.1e-24 117.1 148 49.3
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 1.8e-24 116.3 127 54.3
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 3.1e-24 115.5 142 52.8
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.6e-23 112.5 136 47.8
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 2.6e-23 112.5 85 71.8
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 2.6e-23 112.5 137 51.8
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 4.5e-23 111.7 127 51.2
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 1.3e-22 110.2 150 48.7
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 1.7e-22 109.8 148 48.0
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.9e-22 109.0 151 48.3
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 2.9e-22 109.0 137 51.1
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 3.8e-22 108.6 140 51.4
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 5.0e-22 108.2 91 60.4
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 5.0e-22 108.2 91 60.4
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 3.2e-21 105.5 147 50.3
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 2.7e-20 102.4 149 46.3
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 1.8e-19 99.8 87 59.8
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 2.3e-19 99.4 123 49.6
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 2.3e-19 99.4 131 48.9
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 3.0e-19 99.0 130 48.5
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 6.8e-19 97.8 139 48.9
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 8.8e-19 97.4 128 47.7
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 1.2e-18 97.1 98 55.1
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 1.2e-18 97.1 89 59.6
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.5e-18 96.7 119 49.6
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 2.0e-18 96.3 162 42.0
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 2.6e-18 95.9 91 59.3
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.6e-18 95.9 131 49.6
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 3.4e-18 95.5 130 50.0
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 3.4e-18 95.5 152 44.1
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 4.4e-18 95.1 144 43.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 4.4e-18 95.1 89 59.6
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 5.7e-18 94.7 91 58.2
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 5.7e-18 94.7 102 52.9
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 7.5e-18 94.4 121 49.6
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 7.5e-18 94.4 150 45.3
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 7.5e-18 94.4 167 41.3
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 9.7e-18 94.0 134 47.8
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.3e-17 93.6 88 58.0
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.3e-17 93.6 88 58.0
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.7e-17 93.2 136 47.1
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.7e-17 93.2 136 47.1
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 1.7e-17 93.2 89 55.1
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 2.2e-17 92.8 119 50.4
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 3.7e-17 92.0 145 46.9
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 6.3e-17 91.3 133 46.6
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 6.3e-17 91.3 133 46.6
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 8.3e-17 90.9 88 56.8
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 8.3e-17 90.9 146 44.5
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.1e-16 90.5 127 48.0
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.1e-16 90.5 127 48.0
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.4e-16 90.1 144 45.8
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.8e-16 89.7 132 42.4
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 2.4e-16 89.4 91 57.1
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 3.1e-16 89.0 138 45.7
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 4.1e-16 88.6 138 43.5
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 5.3e-16 88.2 135 45.9
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 9.1e-16 87.4 92 51.1
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 9.1e-16 87.4 92 51.1
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.2e-15 87.0 130 45.4
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.6e-15 86.7 92 56.5
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 2.0e-15 86.3 115 49.6
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.7e-15 85.9 93 50.5
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 3.5e-15 85.5 145 42.8
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 3.5e-15 85.5 145 42.8
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 4.5e-15 85.1 132 43.9
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 4.5e-15 85.1 132 43.9
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 4.5e-15 85.1 114 46.5
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 7.7e-15 84.3 138 41.3
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 1.3e-14 83.6 122 45.1
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-14 82.4 88 53.4
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 3.8e-14 82.0 112 46.4
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 5.0e-14 81.6 153 41.2
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 5.0e-14 81.6 89 52.8
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 8.5e-14 80.9 136 42.6
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 2.5e-13 79.3 76 57.9
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 5.5e-13 78.2 133 42.9
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 5.5e-13 78.2 90 51.1
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 1.2e-12 77.0 126 41.3
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 1.2e-12 77.0 96 52.1
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.2e-12 77.0 146 37.0
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 1.6e-12 76.6 112 42.9
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 1.6e-12 76.6 101 42.6
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 4.0e-11 72.0 133 36.8
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 4.4e-10 68.6 100 49.0
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 5.7e-10 68.2 116 39.7
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.7e-09 65.5 48 64.6
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 8.3e-09 64.3 74 48.6
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 1.8e-08 63.2 107 39.3
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 1.8e-08 63.2 152 35.5
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 4.1e-08 62.0 142 37.3
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 2.7e-07 59.3 92 42.4
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 1.3e-06 57.0 129 36.4


User provided reference genes

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