Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.1e-52 207.6 93 100.0
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 4.7e-24 114.4 52 100.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.7e-24 114.4 52 100.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 6.4e-21 104.0 54 77.8
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 8.1e-16 87.0 50 72.0
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 4.0e-15 84.7 54 63.0
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 4.0e-15 84.7 50 68.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 6.8e-15 84.0 53 69.8
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 8.9e-15 83.6 53 66.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 8.9e-15 83.6 54 64.8
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 8.9e-15 83.6 52 69.2
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 8.9e-15 83.6 51 64.7
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 8.9e-15 83.6 52 69.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.2e-14 83.2 52 69.2
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-14 82.8 54 63.0
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.6e-14 82.0 52 69.2
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.6e-14 82.0 52 65.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.4e-14 81.6 54 63.0
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 4.4e-14 81.3 54 61.1
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 4.4e-14 81.3 52 65.4
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 4.4e-14 81.3 53 64.2
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 7.6e-14 80.5 53 66.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.3e-13 79.7 54 63.0
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 56 57.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 52 65.4
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.3e-13 79.7 53 64.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.3e-13 79.7 54 57.4
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.7e-13 79.3 52 63.5
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 2.2e-13 79.0 58 56.9
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.2e-13 79.0 51 64.7
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.9e-13 78.6 53 60.4
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.9e-13 78.6 53 62.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 3.8e-13 78.2 52 63.5
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 4.9e-13 77.8 51 62.7
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 4.9e-13 77.8 54 64.8
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.9e-13 77.8 52 65.4
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.9e-13 77.8 52 65.4
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.9e-13 77.8 53 62.3
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 6.4e-13 77.4 52 63.5
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.4e-13 77.4 51 64.7
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 6.4e-13 77.4 51 64.7
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 6.4e-13 77.4 52 57.7
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 8.4e-13 77.0 52 57.7
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 8.4e-13 77.0 53 58.5
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.4e-13 77.0 52 55.8
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.4e-12 76.3 53 60.4
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.4e-12 76.3 52 61.5
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.4e-12 76.3 51 58.8
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.4e-12 76.3 54 61.1
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.9e-12 75.9 51 58.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.9e-12 75.9 53 60.4
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 54 61.1
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.9e-12 75.9 52 63.5
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.9e-12 75.9 52 63.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.4e-12 75.5 52 59.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.4e-12 75.5 52 61.5
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.4e-12 75.5 67 55.2
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.4e-12 75.5 50 56.0
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 51 62.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 52 59.6
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 3.2e-12 75.1 53 56.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 3.2e-12 75.1 53 58.5
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 4.2e-12 74.7 51 60.8
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 4.2e-12 74.7 51 60.8
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 52 61.5
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 52 61.5
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.2e-12 74.7 52 61.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 4.2e-12 74.7 52 63.5
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 54 59.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 5.4e-12 74.3 54 59.3
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 9.3e-12 73.6 52 63.5
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 9.3e-12 73.6 51 56.9
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.3e-12 73.6 52 57.7
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.2e-11 73.2 54 53.7
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.2e-11 73.2 53 56.6
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.6e-11 72.8 52 55.8
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.1e-11 72.4 51 58.8
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.1e-11 72.4 53 60.4
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 2.7e-11 72.0 52 55.8
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.5e-11 71.6 52 59.6
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.5e-11 71.6 52 59.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.5e-11 71.6 51 60.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 3.5e-11 71.6 55 49.1
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 53.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 53.8
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 53.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 53.8
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 53.8
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 4.6e-11 71.2 52 59.6
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 4.6e-11 71.2 55 58.2
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 6.0e-11 70.9 52 57.7
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.8e-11 70.5 52 53.8
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.0e-10 70.1 52 53.8
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.0e-10 70.1 52 53.8
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.7e-10 69.3 52 55.8
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.3e-10 68.9 52 55.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.3e-10 68.9 52 55.8
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.3e-10 68.9 52 55.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 3.0e-10 68.6 51 52.9
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.0e-10 68.6 52 57.7
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.0e-10 68.6 50 54.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 8.7e-10 67.0 55 49.1
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.1e-09 66.6 55 50.9
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.5e-09 66.2 55 50.9
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 1.9e-09 65.9 52 53.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.5e-09 65.5 53 56.6
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 2.5e-09 65.5 53 56.6
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 2.5e-09 65.5 53 56.6
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 2.5e-09 65.5 53 56.6
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 2.5e-09 65.5 53 56.6
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 5.6e-09 64.3 53 54.7
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.3e-09 63.9 53 54.7
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.3e-09 63.9 53 52.8
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.6e-09 63.5 53 52.8
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 9.6e-09 63.5 50 52.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.3e-08 63.2 52 51.9
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.3e-08 63.2 55 52.7
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.6e-08 62.8 51 52.9
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.1e-08 62.4 53 50.9
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.1e-08 62.4 56 46.4
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.8e-08 62.0 52 46.2
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 6.2e-08 60.8 52 48.1
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.1e-08 60.5 53 50.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 3.1e-07 58.5 42 57.1
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.9e-07 57.4 52 46.2
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.9e-07 57.4 51 47.1
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 7.6e-06 53.9 54 48.1


User provided reference genes

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