Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 0.0e+00 1149.4 660 100.0
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.0e-302 1042.0 673 88.9
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.4e-297 1023.5 653 89.1
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.6e-296 1022.3 663 89.7
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.9e-293 1011.5 653 88.7
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.9e-291 1003.4 662 86.3
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 4.3e-228 795.0 635 75.3
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 8.5e-168 594.7 647 57.7
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 9.7e-164 581.3 702 53.7
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 1.0e-157 561.2 640 53.9
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.5e-111 407.9 608 51.3
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 3.2e-106 390.2 483 56.1
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.1e-103 381.7 490 52.4
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.2e-102 378.3 504 54.0
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 3.1e-101 373.6 517 48.9
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.5e-100 371.3 504 53.2
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 4.3e-95 353.2 685 40.9
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 5.3e-85 319.7 649 40.7
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 2.6e-84 317.4 721 37.9
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 5.4e-82 309.7 587 41.6
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 6.0e-81 306.2 640 38.1
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.6e-73 281.6 567 40.6
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 7.9e-73 279.3 640 38.3
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 8.7e-72 275.8 376 46.8
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 1.6e-70 271.6 567 40.4
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 8.2e-70 269.2 519 39.7
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.1e-69 268.9 489 40.3
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.0e-67 262.3 522 39.1
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 1.2e-60 238.8 346 46.8
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.7e-57 227.6 511 39.5
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.6e-57 227.3 340 45.3
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 6.1e-57 226.5 437 39.6
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 3.0e-56 224.2 413 40.7
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.8e-54 217.6 434 39.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 4.8e-54 216.9 439 38.3
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 8.2e-54 216.1 446 38.1
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 1.0e-51 209.1 334 42.5
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 3.8e-51 207.2 226 50.9
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.9e-50 204.9 449 39.4
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 3.6e-49 200.7 292 45.9
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.6e-47 194.5 329 42.9
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 2.6e-47 194.5 293 43.0
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 7.4e-47 193.0 291 44.0
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 7.4e-47 193.0 343 41.1
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.7e-46 191.8 517 33.7
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.8e-46 190.3 445 36.9
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 7.0e-45 186.4 319 43.6
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 9.1e-45 186.0 287 42.2
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 7.7e-44 183.0 477 35.2
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 8.5e-43 179.5 309 40.8
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.4e-42 178.7 364 38.2
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 1.9e-42 178.3 448 34.2
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 4.2e-42 177.2 310 40.0
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 5.5e-42 176.8 435 36.3
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 9.4e-42 176.0 445 36.4
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 4.7e-41 173.7 430 39.1
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 8.0e-41 172.9 310 39.0
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.5e-39 168.7 487 33.3
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 2.6e-39 167.9 442 33.3
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 9.7e-39 166.0 481 32.2
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 8.2e-38 162.9 447 33.6
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 1.1e-37 162.5 339 36.3
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.4e-37 162.2 560 30.7
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.4e-37 161.4 373 37.0
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 3.1e-37 161.0 311 40.2
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 9.1e-37 159.5 308 39.6
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 1.0e-35 156.0 318 37.7
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.1e-34 152.5 331 39.9
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.1e-34 152.5 298 41.3
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 7.2e-34 149.8 342 34.5
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 9.4e-34 149.4 327 34.3
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 3.6e-33 147.5 327 37.6
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 8.0e-33 146.4 407 36.6
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.2e-31 142.5 237 40.1
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.5e-31 142.1 235 40.9
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.0e-31 141.7 340 35.6
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 2.6e-31 141.4 455 31.0
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.3e-31 141.0 152 51.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 2.8e-30 137.9 341 36.4
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 2.4e-29 134.8 344 34.3
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 3.1e-29 134.4 211 39.3
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 1.2e-28 132.5 317 37.2
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.6e-28 132.1 398 30.9
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 6.5e-27 126.7 411 29.7
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 5.5e-26 123.6 340 32.9
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 3.6e-25 120.9 322 30.7
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 6.1e-25 120.2 315 33.3
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 3.0e-24 117.9 430 30.2
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 4.0e-24 117.5 324 33.6
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.2e-23 115.9 355 32.1
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.5e-23 115.5 332 30.7
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.4e-23 114.4 335 33.1
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 9.8e-23 112.8 326 31.9
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 2.8e-22 111.3 445 28.5
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 6.3e-22 110.2 325 32.0
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 6.3e-22 110.2 347 30.8
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 8.3e-22 109.8 205 37.1
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 5.4e-21 107.1 205 36.6
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 5.4e-21 107.1 205 36.6
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 7.7e-20 103.2 377 31.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 2.3e-19 101.7 245 36.7
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.9e-18 98.6 386 30.1
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.5e-18 98.2 78 59.0
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 7.2e-18 96.7 224 33.5
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 8.0e-17 93.2 221 32.1
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 8.0e-17 93.2 307 31.6
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 1.0e-16 92.8 84 57.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.0e-16 92.8 335 29.6
FvH4_7g26910 Fragaria vesca HOM05D018285 ORTHO05D020673 5.7e-15 87.0 115 47.8
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.7e-14 85.5 373 26.3
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 2.9e-11 74.7 92 39.1
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 8.6e-11 73.2 388 28.1
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 1.1e-10 72.8 368 28.8
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-10 72.8 468 28.2
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 1.9e-10 72.0 117 34.2
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 4.3e-10 70.9 115 35.7
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 3.1e-08 64.7 189 30.7
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 3.1e-08 64.7 408 27.2
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 3.1e-08 64.7 194 29.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.2e-07 62.8 183 28.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.5e-07 62.4 194 26.8
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 2.6e-07 61.6 189 25.9
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 2.6e-07 61.6 232 26.7
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 3.4e-07 61.2 189 28.0
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.4e-07 60.8 237 27.0
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 4.4e-07 60.8 209 25.4
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 4.4e-07 60.8 195 28.2
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 4.4e-07 60.8 185 28.6
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 4.4e-07 60.8 191 28.3
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 5.8e-07 60.5 189 27.0
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.5e-07 60.1 189 26.5
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 9.8e-07 59.7 210 27.1
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.3e-06 59.3 190 26.8
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.7e-06 58.9 234 24.8
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.7e-06 58.9 200 26.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 1.7e-06 58.9 193 23.3
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.2e-06 58.5 183 27.9
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 3.7e-06 57.8 230 28.3
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 4.9e-06 57.4 205 24.4
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 6.4e-06 57.0 212 26.9
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 6.4e-06 57.0 185 27.0
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 8.3e-06 56.6 231 26.0
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 8.3e-06 56.6 181 30.4


User provided reference genes

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