Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1615 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.7e-78 295.8 141 100.0
FAN08G0117 Fragaria x ananassa HOM05D003581 ORTHO05D004332 3.4e-74 281.6 138 97.1
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 1.9e-56 222.6 148 76.4
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.9e-56 222.6 148 76.4
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.9e-56 222.6 148 76.4
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 4.2e-56 221.5 148 75.7
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.2e-55 219.9 148 75.7
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 2.1e-52 209.1 150 72.0
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 7.1e-48 194.1 148 65.5
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 9.3e-48 193.7 148 64.9
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 5.3e-43 177.9 115 72.2
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 9.0e-43 177.2 150 59.3
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 1.2e-42 176.8 150 62.0
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 5.8e-42 174.5 150 60.7
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 5.8e-42 174.5 150 60.7
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 1.0e-41 173.7 150 58.7
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 1.0e-41 173.7 150 58.7
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 1.0e-41 173.7 150 58.7
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 2.2e-41 172.6 150 59.3
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 2.2e-41 172.6 150 59.3
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 6.5e-41 171.0 149 60.4
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 1.9e-40 169.5 150 61.3
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 2.5e-40 169.1 150 59.3
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 3.2e-40 168.7 150 57.3
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 3.2e-40 168.7 150 56.7
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 3.2e-40 168.7 150 56.7
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 3.2e-40 168.7 150 58.7
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 4.2e-40 168.3 148 58.8
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 5.5e-40 167.9 150 58.0
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 5.5e-40 167.9 150 56.0
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 5.5e-40 167.9 150 58.0
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 5.5e-40 167.9 150 59.3
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 7.1e-40 167.5 150 58.0
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 7.1e-40 167.5 150 58.7
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 9.3e-40 167.2 150 56.7
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 9.3e-40 167.2 150 59.3
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 1.2e-39 166.8 165 55.8
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.2e-39 166.8 150 58.0
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 1.2e-39 166.8 150 58.0
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 1.6e-39 166.4 150 58.7
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 2.1e-39 166.0 154 57.1
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 2.7e-39 165.6 150 58.7
FAN02G4325 Fragaria x ananassa HOM05D003581 ORTHO05D004332 4.6e-39 164.9 74 100.0
CiPaw.01G170500 Carya illinoinensis HOM05D003581 ORTHO05D004332 6.0e-39 164.5 150 58.0
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 6.0e-39 164.5 148 58.1
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 6.0e-39 164.5 150 56.7
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 1.3e-38 163.3 149 56.4
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 2.3e-38 162.5 157 56.7
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 2.3e-38 162.5 149 55.7
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 2.3e-38 162.5 150 56.7
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 3.0e-38 162.2 150 56.7
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 3.9e-38 161.8 150 56.0
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 5.1e-38 161.4 149 56.4
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 6.7e-38 161.0 144 58.3
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 8.7e-38 160.6 155 55.5
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 8.7e-38 160.6 150 56.0
Ciclev10020241m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.1e-37 160.2 150 56.0
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 1.1e-37 160.2 150 56.0
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 1.1e-37 160.2 150 56.0
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 1.9e-37 159.5 150 56.7
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 1.9e-37 159.5 150 54.7
PGSC0003DMG400014635 Solanum tuberosum HOM05D003581 ORTHO05D004332 3.3e-37 158.7 150 54.7
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 4.3e-37 158.3 150 56.7
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 4.3e-37 158.3 150 56.7
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 4.3e-37 158.3 150 56.7
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 4.3e-37 158.3 150 55.3
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 5.7e-37 157.9 150 57.3
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 5.7e-37 157.9 165 51.5
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 5.7e-37 157.9 150 54.0
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 9.6e-37 157.1 149 53.0
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 9.6e-37 157.1 150 53.3
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 1.3e-36 156.8 150 54.0
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 2.1e-36 156.0 150 54.7
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 2.8e-36 155.6 150 53.3
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 3.7e-36 155.2 150 54.7
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 3.7e-36 155.2 150 54.0
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 4.8e-36 154.8 144 56.2
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 4.8e-36 154.8 150 56.0
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 6.3e-36 154.5 151 53.6
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 6.3e-36 154.5 151 54.3
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 6.3e-36 154.5 152 54.6
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 6.3e-36 154.5 151 54.3
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 6.3e-36 154.5 152 54.6
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 8.2e-36 154.1 151 53.6
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 8.2e-36 154.1 150 52.7
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 8.2e-36 154.1 150 54.0
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 8.2e-36 154.1 150 54.7
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 1.1e-35 153.7 152 54.6
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 1.1e-35 153.7 152 54.6
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 1.1e-35 153.7 152 54.6
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.1e-35 153.7 150 53.3
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 1.4e-35 153.3 151 53.0
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.4e-35 153.3 151 54.3
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 1.8e-35 152.9 151 53.6
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 1.8e-35 152.9 151 53.6
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 1.8e-35 152.9 151 52.3
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 2.4e-35 152.5 144 55.6
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 3.1e-35 152.1 149 55.0
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 3.1e-35 152.1 151 53.6
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 4.1e-35 151.8 148 52.7
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 5.3e-35 151.4 160 50.6
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 5.3e-35 151.4 151 54.3
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 9.0e-35 150.6 151 54.3
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.2e-34 150.2 150 52.0
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 1.2e-34 150.2 150 52.0
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 2.6e-34 149.1 149 51.7
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 3.4e-34 148.7 143 53.8
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 4.5e-34 148.3 150 55.3
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 5.9e-34 147.9 152 53.3
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 7.6e-34 147.5 150 54.7
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 7.6e-34 147.5 139 59.0
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 7.6e-34 147.5 151 51.7
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 7.6e-34 147.5 149 50.3
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 1.3e-33 146.7 148 50.0
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.3e-33 146.7 150 52.7
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 1.3e-33 146.7 150 50.7
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 1.3e-33 146.7 150 51.3
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 1.7e-33 146.4 150 50.7
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 2.9e-33 145.6 159 49.1
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 3.8e-33 145.2 201 43.8
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 5.0e-33 144.8 177 45.2
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 5.0e-33 144.8 151 51.0
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 1.1e-32 143.7 150 50.0
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 1.4e-32 143.3 177 45.8
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 5.5e-32 141.4 150 51.3
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 7.2e-32 141.0 150 51.3
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 1.2e-31 140.2 150 49.3
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 1.2e-31 140.2 150 51.3
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 2.1e-31 139.4 68 89.7
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 2.7e-31 139.0 150 51.3
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 4.6e-31 138.3 150 49.3
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 6.1e-31 137.9 147 48.3
Gohir.D02G010400 Gossypium hirsutum HOM05D000101 ORTHO05D002559 1.3e-30 136.7 85 72.9
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.3e-30 136.7 160 46.2
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 5.1e-30 134.8 67 86.6
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 2.5e-29 132.5 67 86.6
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 9.7e-29 130.6 146 51.4
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 3.7e-28 128.6 133 51.1
CAN.G759.10 Capsicum annuum HOM05D003581 ORTHO05D004332 2.4e-27 125.9 65 83.1
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 2.4e-27 125.9 156 44.9
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 1.2e-26 123.6 150 46.0
Hund03203 Selenicereus undatus HOM05D003581 ORTHO05D004332 3.4e-26 122.1 69 75.4
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 5.9e-26 121.3 131 47.3
SEGI_09569 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 2.9e-25 119.0 67 74.6
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.1e-24 117.1 133 48.1
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 3.2e-24 115.5 147 44.9
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 5.5e-24 114.8 156 39.7
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 7.9e-23 110.9 151 41.7
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.0e-22 110.5 150 39.3
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 3.0e-22 109.0 87 55.2
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 8.8e-22 107.5 152 40.8
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 1.1e-21 107.1 77 57.1
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 3.3e-21 105.5 152 36.2
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 5.0e-17 91.7 159 34.6
Actinidia28980 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.1e-16 90.5 133 41.4
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 3.9e-14 82.0 163 35.6
AL5G41680 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 2.0e-13 79.7 41 82.9
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 2.8e-12 75.9 111 44.1


User provided reference genes

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