Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1515 Fragaria x ananassa HOM05D006865 ORTHO05D009005 2.5e-150 535.4 267 100.0
FAN03G0792 Fragaria x ananassa HOM05D006865 ORTHO05D009005 5.8e-99 364.8 182 98.9
FAN02G1779 Fragaria x ananassa HOM05D006865 ORTHO05D009005 1.1e-97 360.5 182 97.8
FvH4_2g35860 Fragaria vesca HOM05D006865 ORTHO05D009005 7.1e-89 331.3 173 96.0
FAN27G2310 Fragaria x ananassa HOM05D006865 ORTHO05D009005 2.1e-88 329.7 173 95.4
FAN15G3339 Fragaria x ananassa HOM05D006865 ORTHO05D009005 1.5e-86 323.6 174 94.3
RcHm_v2.0_Chr6g0305961 Rosa chinensis HOM05D006865 ORTHO05D009005 9.3e-65 251.1 174 79.9
MD15G1095700 Malus domestica HOM05D006865 ORTHO05D009005 1.4e-41 174.1 178 60.1
QL12p029455 Quercus lobata HOM05D006865 ORTHO05D009005 3.1e-36 156.4 183 56.3
CANSAT25G0847 Cannabis sativa HOM05D006865 ORTHO05D009005 5.3e-36 155.6 206 48.5
CiPaw.07G205700 Carya illinoinensis HOM05D006865 ORTHO05D009005 7.2e-33 145.2 177 56.5
Sed0006345 Sechium edule HOM05D006865 ORTHO05D009005 8.2e-29 131.7 174 50.0
Prupe.1G450700 Prunus persica HOM05D006865 ORTHO05D009005 7.7e-27 125.2 176 47.7
Duzib187G1827 Durio zibethinus HOM05D006865 ORTHO05D009005 2.9e-26 123.2 192 46.9
ClCG11G015200 Citrullus lanatus HOM05D006865 ORTHO05D009005 2.5e-25 120.2 175 45.7
CsaV3_3G048620 Cucumis sativus L. HOM05D006865 ORTHO05D009005 4.2e-25 119.4 174 45.4
Dinv30268 Davidia involucrata HOM05D006865 ORTHO05D009005 6.1e-24 115.5 221 41.6
Thecc.09G042300 Theobroma cacao HOM05D006865 ORTHO05D009005 3.0e-23 113.2 189 47.1
Manes.16G071500 Manihot esculenta HOM05D006865 ORTHO05D009005 1.5e-22 110.9 188 42.6
Potri.006G240400 Populus trichocarpa HOM05D006865 ORTHO05D009005 7.5e-22 108.6 188 43.6
Cfa016677 Carpinus fangiana HOM05D006865 ORTHO05D009005 2.2e-21 107.1 175 41.1
Haze_19694 Corylus avellana HOM05D006865 ORTHO05D009005 2.8e-21 106.7 176 41.5
Migut.E01518 Erythranthe guttata HOM05D006865 ORTHO05D009005 3.1e-20 103.2 232 38.8
Hma1.2p1_1163F.1_g262770 Hydrangea macrophylla HOM05D006865 ORTHO05D009005 7.0e-20 102.1 182 42.3
Ciclev10008902m.g Citrus clementina HOM05D006865 ORTHO05D009005 2.7e-19 100.1 176 43.2
Nn3g18133 Nelumbo nucifera HOM05D006865 ORTHO05D009005 5.9e-19 99.0 181 40.9
TAR636G1122 Trochodendron aralioides HOM05D006865 ORTHO05D009005 1.0e-18 98.2 182 43.4
Cc08_g09210 Coffea canephora HOM05D006865 ORTHO05D009005 1.3e-18 97.8 187 40.1
AUR62009307 Chenopodium quinoa HOM05D006865 ORTHO05D009005 5.5e-17 92.4 176 38.6
MELO3C003458.2 Cucumis melo HOM05D006865 ORTHO05D009005 7.2e-17 92.0 177 39.5
Aqoxy7G03866 Aquilegia oxysepala HOM05D006865 ORTHO05D009005 9.4e-17 91.7 229 38.0
TWI63G0791 Tripterygium wilfordii HOM05D006865 ORTHO05D009005 3.6e-16 89.7 177 42.4
Lj1g0027381 Lotus japonicus HOM05D006865 ORTHO05D009005 1.0e-15 88.2 170 40.6
Peaxi162Scf00276g00123 Petunia axillaris HOM05D006865 ORTHO05D009005 1.4e-15 87.8 167 41.9
Oeu031553.1 Olea europaea HOM05D006865 ORTHO05D009005 2.3e-15 87.0 241 34.9
Lalb_Chr23g0269541 Lupinus albus HOM05D006865 ORTHO05D009005 3.0e-15 86.7 178 41.0
MSTRG.14022 Avicennia marina HOM05D006865 ORTHO05D009005 4.0e-15 86.3 219 37.4
PSO210G5031 Papaver somniferum HOM05D006865 ORTHO05D009005 6.8e-15 85.5 187 42.2
Phvul.009G107700 Phaseolus vulgaris HOM05D006865 ORTHO05D009005 6.8e-15 85.5 217 36.9
arahy.Tifrunner.gnm1.ann1.T16V0S Arachis hypogaea HOM05D006865 ORTHO05D009005 1.5e-14 84.3 172 39.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 5.7e-14 82.4 123 46.3
Nitab4.5_0001567g0190 Nicotiana tabacum HOM05D006865 ORTHO05D009005 5.7e-14 82.4 174 40.2
SGA_v2.0_scaffold163G38079 Striga asiatica HOM05D006865 ORTHO05D009005 7.5e-14 82.0 173 37.6
PSO210G4422 Papaver somniferum HOM05D006865 ORTHO05D009005 1.3e-13 81.3 186 40.9
VMungo1309G1411 Vigna mungo HOM05D006865 ORTHO05D009005 1.3e-13 81.3 218 36.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.2e-13 80.5 188 40.4
Solyc11g071240.2 Solanum lycopersicum HOM05D006865 ORTHO05D009005 2.2e-13 80.5 165 38.8
arahy.Tifrunner.gnm1.ann1.ZC464Z Arachis hypogaea HOM05D006865 ORTHO05D009005 2.8e-13 80.1 172 38.4
Atru.chr7.2136 Acer truncatum HOM05D006865 ORTHO05D009005 8.3e-13 78.6 171 36.3
Medtr3g110088 Medicago truncatula HOM05D006865 ORTHO05D009005 1.1e-12 78.2 256 32.4
Medtr3g110138 Medicago truncatula HOM05D006865 ORTHO05D009005 1.1e-12 78.2 205 35.1
Nitab4.5_0000664g0200 Nicotiana tabacum HOM05D006865 ORTHO05D009005 1.4e-12 77.8 175 40.0
CDE08G1680 Ceratophyllum demersum HOM05D006865 ORTHO05D009005 1.2e-11 74.7 244 38.9
Glyma.06G083600 Glycine max HOM05D006865 ORTHO05D009005 3.5e-11 73.2 214 35.0
BcaB08g37044 Brassica carinata HOM05D006865 ORTHO05D009005 4.5e-11 72.8 163 33.7
PGR044G0390 Punica granatum HOM05D006865 ORTHO05D009005 5.9e-11 72.4 110 43.6
BcaC03g13374 Brassica carinata HOM05D006865 ORTHO05D009005 5.0e-10 69.3 165 34.5
C02p05200 Brassica napus HOM05D006865 ORTHO05D009005 5.0e-10 69.3 165 34.5
Carub.0006s1002 Capsella rubella HOM05D006865 ORTHO05D009005 5.0e-10 69.3 165 36.4
A02p01060 Brassica napus HOM05D006865 ORTHO05D009005 8.5e-10 68.6 165 35.2
BolC2t06470H Brassica oleracea HOM05D006865 ORTHO05D009005 8.5e-10 68.6 165 33.9
BraA02t05086Z Brassica rapa HOM05D006865 ORTHO05D009005 8.5e-10 68.6 165 35.2
DCAR_007711 Daucus carota HOM05D006865 ORTHO05D009005 8.5e-10 68.6 170 37.1
Sp6g32050 Schrenkiella parvula HOM05D006865 ORTHO05D009005 8.5e-10 68.6 168 35.7
CARHR201670 Cardamine hirsuta HOM05D006865 ORTHO05D009005 1.1e-09 68.2 160 33.8
AT5G11550 Arabidopsis thaliana HOM05D006865 ORTHO05D009005 2.5e-09 67.0 160 35.0
HanXRQChr11g0351701 Helianthus annuus HOM05D006865 ORTHO05D009005 4.2e-09 66.2 165 37.6
Sabra06G0188000 Salix brachista HOM05D006865 ORTHO05D009005 7.2e-09 65.5 50 66.0
BcaC04g19215 Brassica carinata HOM05D006865 ORTHO05D009005 1.2e-08 64.7 161 34.8
C09p65260 Brassica napus HOM05D006865 ORTHO05D009005 1.2e-08 64.7 161 34.8
ECA248G0081 Erigeron canadensis HOM05D006865 ORTHO05D009005 1.6e-08 64.3 164 36.6
MBI01_g38802_MAGBIO Magnolia biondii HOM05D006865 ORTHO05D009005 1.6e-08 64.3 166 37.3
A10p26220 Brassica napus HOM05D006865 ORTHO05D009005 2.1e-08 63.9 161 34.2
BraA10t44679Z Brassica rapa HOM05D006865 ORTHO05D009005 2.1e-08 63.9 161 34.2
AL6G22220 Arabidopsis lyrata HOM05D006865 ORTHO05D009005 1.0e-07 61.6 160 35.0
BcaNung01933 Brassica carinata HOM05D006865 ORTHO05D009005 1.4e-07 61.2 160 35.6
BolC9t59354H Brassica oleracea HOM05D006865 ORTHO05D009005 1.8e-07 60.8 161 34.2
Thhalv10014169m.g Eutrema salsugineum HOM05D006865 ORTHO05D009005 3.0e-07 60.1 160 34.4
EL10Ac2g04049 Beta vulgaris HOM05D006865 ORTHO05D009005 5.2e-07 59.3 178 34.8
Potri.018G039701 Populus trichocarpa HOM05D006865 ORTHO05D009005 6.8e-07 58.9 101 40.6
Lj8A588T26 Lonicera japonica HOM05D006865 ORTHO05D009005 1.5e-06 57.8 176 32.4
Glyma.04G081900 Glycine max HOM05D006865 ORTHO05D009005 2.0e-06 57.4 171 32.7
THA.LOC104814775 Tarenaya hassleriana HOM05D006865 ORTHO05D009005 2.0e-06 57.4 176 29.5
A03p05090 Brassica napus HOM05D011734 ORTHO05D009005 3.4e-06 56.6 171 31.0
Lsat_1_v5_gn_1_49660 Lactuca sativa HOM05D006865 ORTHO05D009005 7.5e-06 55.5 181 33.7


User provided reference genes

Program Settings