Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2557.7 1290 100.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2410.2 1294 95.0
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 0.0e+00 2400.9 1295 94.7
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 0.0e+00 2392.5 1295 94.4
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 2352.0 1293 93.2
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 0.0e+00 1948.3 1307 78.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 0.0e+00 1328.2 1339 58.1
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1163.3 1286 55.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 0.0e+00 1112.1 1301 53.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 9.8e-253 877.9 1372 44.9
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.0e-237 827.0 1411 43.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.4e-229 799.3 1356 43.0
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 4.7e-223 779.2 1521 39.7
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.9e-221 771.5 1508 39.0
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.6e-213 745.3 1378 41.2
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 8.4e-212 741.9 1378 41.1
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 4.3e-200 703.0 1364 39.3
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 8.4e-196 688.7 1419 38.7
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.8e-190 671.0 1281 39.3
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.2e-189 668.3 1278 39.0
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 6.5e-188 662.5 1435 37.4
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 7.2e-187 659.1 1435 37.1
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 2.1e-186 657.5 1437 36.9
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 4.6e-186 656.4 1426 37.2
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 3.0e-185 653.7 1328 37.9
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-183 648.3 1313 38.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.4e-182 644.8 1389 37.7
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.0e-181 641.0 1428 37.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.1e-179 635.2 1426 36.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 7.4e-176 622.5 1320 37.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 5.9e-173 612.8 1428 36.2
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.0e-172 612.1 1336 39.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.2e-171 606.7 1324 36.6
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.8e-167 593.2 1375 35.9
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 4.8e-167 593.2 1449 36.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.1e-162 577.8 1401 36.0
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.3e-161 574.3 1335 37.5
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.8e-159 567.4 1370 36.7
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 4.8e-159 566.6 1394 36.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.8e-158 564.7 1387 36.1
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 9.1e-158 562.4 1373 36.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.6e-157 561.6 1450 35.0
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 5.2e-153 546.6 1463 33.3
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.8e-151 540.8 1373 35.4
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.0e-150 536.2 1394 35.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.5e-144 518.5 1120 37.8
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.2e-138 498.8 1391 34.3
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 2.1e-138 498.0 1383 33.8
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.4e-128 463.8 1434 32.4
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.3e-124 452.2 1376 34.3
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.0e-124 451.1 1326 33.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 3.3e-115 421.0 1396 31.9
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.8e-113 415.2 1369 32.8
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.4e-112 411.0 1331 31.9
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 3.5e-109 401.0 1350 32.2
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 6.0e-109 400.2 1425 30.3
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.7e-108 398.7 1400 31.4
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.1e-108 397.1 1434 29.2
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.7e-103 382.1 1386 30.6
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.7e-103 382.1 1328 30.9
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.9e-103 381.3 1322 30.8
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.4e-102 378.3 1388 30.2
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.7e-100 372.1 1349 31.4
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 6.4e-95 353.6 959 33.7
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.1e-92 344.0 1358 30.1
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-87 328.2 1358 29.0
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.3e-84 319.3 1429 28.3
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 3.0e-84 318.2 295 61.0
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.4e-78 299.3 563 40.1
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.3e-76 292.7 923 30.4
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 3.7e-74 284.6 895 33.7
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 7.4e-67 260.4 1387 27.8
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 9.4e-62 243.4 710 33.2
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.1e-60 237.7 1056 29.0
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 8.8e-60 236.9 1207 27.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.7e-58 232.6 1172 27.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.1e-57 228.4 1484 27.4
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.2e-56 226.5 775 33.8
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 7.9e-53 213.8 721 31.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.5e-51 209.5 1115 28.3
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 7.4e-51 207.2 736 30.4
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 9.7e-51 206.8 679 32.1
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.6e-48 199.5 720 29.9
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.6e-48 198.7 733 29.9
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 4.2e-46 191.4 1336 26.6
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 7.5e-43 180.6 1223 26.7
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.4e-41 176.4 1343 26.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.2e-40 173.3 1299 26.1
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 3.8e-39 168.3 1002 27.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 9.4e-38 163.7 1335 26.1
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 1.2e-37 163.3 638 30.1
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.7e-37 161.4 372 36.0
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-36 160.2 674 29.1
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.5e-35 156.4 1329 25.2
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 3.7e-34 151.8 1302 24.7
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.5e-30 139.0 1476 24.3
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 5.4e-25 121.3 670 27.3
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 5.4e-25 121.3 1358 24.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 2.0e-24 119.4 453 29.6
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 1.0e-23 117.1 1050 24.5
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-23 116.7 1320 24.2
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 2.3e-23 115.9 1310 24.0
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 8.6e-23 114.0 1053 24.3
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.6e-23 114.0 291 34.4
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.9e-22 112.8 635 26.9
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 4.7e-21 108.2 1084 24.7
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 2.3e-20 105.9 1325 23.4
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 5.2e-20 104.8 1293 24.7
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 1.3e-18 100.1 1297 24.0
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.2e-18 99.4 957 25.0
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.4e-17 95.9 1333 23.8
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 5.4e-17 94.7 351 31.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 5.9e-16 91.3 360 30.3
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.8e-16 90.9 384 29.7
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 8.6e-15 87.4 768 25.0
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.9e-14 86.3 327 32.4
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 3.6e-13 82.0 268 32.8
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 6.2e-13 81.3 682 26.2
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 7.5e-11 74.3 791 25.8
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 6.4e-10 71.2 159 34.0
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 8.3e-10 70.9 143 35.7
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 4.6e-08 65.1 144 33.3
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.8e-08 64.3 46 67.4
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.7e-07 63.2 771 25.6
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-07 62.8 235 33.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.9e-07 62.0 925 24.5
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.1e-06 60.5 564 25.2
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.1e-06 60.5 43 65.1
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.1e-06 60.5 43 65.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.5e-06 59.3 777 22.9


User provided reference genes

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