Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 5.5e-74 280.8 133 100.0
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.2e-73 279.6 133 99.2
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-73 279.6 133 99.2
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.2e-73 279.6 133 99.2
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.8e-70 268.5 133 94.7
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.3e-64 249.6 133 86.5
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 1.9e-63 245.7 133 82.0
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 3.3e-63 245.0 133 82.7
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 82.0
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 2.2e-62 242.3 133 82.7
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.4e-61 239.6 133 81.2
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.8e-61 239.2 130 82.3
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 3.1e-61 238.4 133 78.2
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 4.1e-61 238.0 130 80.8
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 82.0
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.5e-60 236.1 130 80.0
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 76.7
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 2.0e-60 235.7 130 79.2
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.6e-60 235.3 133 78.9
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 2.6e-60 235.3 130 80.8
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 80.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 80.0
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 79.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 77.7
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 7.7e-60 233.8 133 79.7
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 1.0e-59 233.4 132 78.0
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.2
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 76.7
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 78.5
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 77.7
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 77.7
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.7e-59 232.6 129 79.1
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.7e-59 232.6 133 78.2
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.9e-59 231.9 129 78.3
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.9e-59 231.9 130 78.5
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 2.9e-59 231.9 129 80.6
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 5.0e-59 231.1 133 76.7
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 5.0e-59 231.1 133 76.7
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.5e-59 230.7 133 78.2
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 6.5e-59 230.7 130 78.5
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 8.5e-59 230.3 130 76.9
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 77.4
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.9e-58 229.2 133 76.7
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.9e-58 229.2 129 76.7
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 3.2e-58 228.4 133 75.9
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 7.2e-58 227.3 133 78.2
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.2e-57 226.5 130 76.2
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.6e-57 226.1 130 77.7
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.7e-57 225.3 133 76.7
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 4.6e-57 224.6 133 76.7
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 4.6e-57 224.6 129 76.7
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 6.1e-57 224.2 130 74.6
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 6.1e-57 224.2 130 75.4
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.0e-56 223.4 133 77.4
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 2.3e-56 222.2 132 75.8
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.0e-56 221.9 132 75.8
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 3.0e-56 221.9 132 75.8
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 3.0e-56 221.9 133 72.9
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 3.9e-56 221.5 133 73.7
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 3.9e-56 221.5 130 74.6
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.9e-56 221.5 134 73.1
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 8.8e-56 220.3 133 75.9
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.5e-55 219.5 135 73.3
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.0e-55 219.2 127 76.4
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 2.0e-55 219.2 133 75.2
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 2.5e-55 218.8 133 73.7
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 4.3e-55 218.0 174 60.3
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 5.7e-55 217.6 130 71.5
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 5.7e-55 217.6 130 72.3
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.3e-54 216.5 130 73.1
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.7e-54 216.1 129 74.4
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.2e-54 215.7 129 73.6
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 4.8e-54 214.5 130 72.3
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 4.8e-54 214.5 130 71.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 8.2e-54 213.8 133 72.9
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 3.1e-53 211.8 134 72.4
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 4.1e-53 211.5 130 72.3
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 5.3e-53 211.1 132 75.8
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 2.0e-52 209.1 130 73.1
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 5.0e-51 204.5 130 70.8
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.9e-48 194.9 129 67.4
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 8.8e-48 193.7 131 64.9
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.1e-47 193.4 129 65.1
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.3e-46 189.9 112 75.9
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.0e-45 184.1 224 43.3
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 9.1e-45 183.7 131 63.4
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.2e-44 183.3 131 62.6
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.5e-44 183.0 133 61.7
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 5.9e-44 181.0 131 61.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.0e-43 180.3 131 61.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.0e-43 180.3 133 60.9
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 2.9e-43 178.7 130 62.3
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 3.8e-43 178.3 131 60.3
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 3.8e-43 178.3 131 60.3
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 3.8e-43 178.3 131 60.3
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 5.0e-43 177.9 131 61.1
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 6.5e-43 177.6 131 59.5
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 6.5e-43 177.6 131 59.5
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 5.5e-42 174.5 131 63.4
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 7.2e-42 174.1 130 57.7
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.6e-41 172.9 133 57.9
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 3.0e-40 168.7 129 54.3
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 5.7e-39 164.5 156 51.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 1.1e-37 160.2 132 56.1
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 2.4e-37 159.1 133 55.6
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 9.1e-37 157.1 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 3.5e-36 155.2 129 55.0
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 3.8e-35 151.8 130 53.1
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 5.0e-35 151.4 102 64.7
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 6.5e-35 151.0 85 76.5
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 1.1e-34 150.2 132 50.8
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 1.9e-34 149.4 85 78.8
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 6.1e-33 144.4 130 49.2
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 2.3e-32 142.5 83 74.7
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.9e-27 125.6 76 72.4
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 4.2e-26 121.7 130 50.0
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 2.7e-25 119.0 67 76.1
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.3e-22 110.2 72 75.0
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.2e-17 93.6 119 42.0
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.1e-17 92.8 55 61.8
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 2.0e-15 86.3 48 79.2
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 4.4e-15 85.1 48 77.1
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.3e-11 73.6 53 62.3
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 2.3e-11 72.8 115 35.7
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 4.3e-10 68.6 43 69.8
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.6e-09 66.6 47 63.8
Cre12.g549500 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 5.2e-08 61.6 88 35.2


User provided reference genes

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