Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1805.4 1207 100.0
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1732.2 1211 94.7
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1727.2 1211 92.0
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1719.1 1209 94.8
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1680.6 1216 90.7
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 0.0e+00 1679.5 1216 88.7
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1679.1 1216 90.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 0.0e+00 1392.9 1230 77.2
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-285 986.9 1258 63.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.5e-284 983.4 1254 64.4
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 4.0e-256 889.0 1248 57.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.6e-212 742.7 1302 50.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.3e-211 741.1 1266 51.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.1e-208 731.5 1283 51.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.1e-204 717.2 1267 51.9
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 4.8e-185 652.9 1086 44.7
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 2.6e-183 647.1 1262 48.3
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.0e-182 645.2 1264 47.5
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 6.3e-177 625.9 1254 45.7
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 6.3e-177 625.9 1254 46.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.4e-176 624.0 1250 40.3
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.1e-176 623.6 1252 47.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 4.1e-176 623.2 1267 50.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.5e-173 612.8 1262 47.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.9e-171 606.7 1248 47.8
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.1e-168 596.7 1240 47.1
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.5e-167 594.7 1256 46.6
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.7e-167 592.4 1235 45.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.0e-162 577.8 818 46.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 3.1e-160 570.5 1020 49.0
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 5.3e-160 569.7 1025 44.7
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.0e-160 569.3 1246 48.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 2.6e-159 567.4 1014 47.3
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.9e-159 566.2 1302 46.5
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.0e-158 563.1 1244 47.6
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.5e-154 551.6 1290 41.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.0e-152 542.7 1242 48.9
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.0e-151 541.2 1265 39.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.5e-151 540.4 1243 44.8
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.2e-146 525.4 1200 46.0
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.4e-146 523.9 1205 45.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.7e-146 523.1 814 42.5
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 8.3e-145 519.2 1234 40.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 7.0e-144 516.2 1248 42.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 6.6e-142 509.6 1245 43.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 3.3e-141 507.3 809 42.0
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.7e-134 485.0 1037 41.9
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 6.8e-131 473.0 1036 44.4
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.0e-130 471.5 1247 39.1
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 6.4e-129 466.5 1182 39.8
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.9e-125 454.9 1236 40.1
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.9e-125 454.9 1321 42.8
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 5.6e-125 453.4 1196 40.1
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.7e-124 450.3 1233 38.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.2e-120 437.6 838 42.4
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.1e-119 434.9 814 38.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.1e-119 434.9 1331 36.3
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.1e-119 434.9 1269 36.5
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.1e-115 422.5 1302 39.2
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 2.0e-114 418.3 1269 39.2
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 3.7e-113 414.1 1303 37.5
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 7.8e-111 406.4 1265 37.5
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.7e-110 405.2 1326 39.4
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.6e-108 397.5 802 41.9
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.2e-108 396.7 606 44.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.4e-106 390.6 1076 44.0
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.7e-102 378.6 835 36.6
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.9e-102 377.5 850 36.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.3e-101 374.0 828 36.6
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.6e-101 373.6 1264 36.1
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.1e-100 371.7 621 42.7
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.8e-100 371.3 664 40.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.9e-99 366.7 1068 37.8
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.4e-96 358.2 1265 40.5
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 3.9e-94 350.9 1245 32.8
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 6.6e-94 350.1 830 35.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.4e-91 342.4 1285 36.1
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.8e-91 342.0 823 35.4
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.2e-87 329.3 611 39.8
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.6e-87 328.9 1287 38.0
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 3.5e-87 327.8 837 34.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.6e-87 327.4 494 42.3
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.3e-86 325.9 815 33.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.9e-85 322.0 1026 38.9
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.4e-85 320.1 742 35.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.6e-84 318.9 1253 35.5
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.4e-83 315.8 1341 32.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.5e-82 312.4 1295 36.1
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.6e-82 311.6 601 40.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-81 308.9 604 39.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.2e-81 308.5 604 38.9
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 3.8e-81 307.8 1050 39.7
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 3.8e-81 307.8 1055 31.8
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 9.3e-80 303.1 827 34.6
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.6e-79 302.4 827 34.5
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.7e-79 301.6 1284 35.7
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.5e-79 301.2 604 40.1
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 7.9e-79 300.1 817 34.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 7.9e-79 300.1 826 34.6
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.0e-78 298.1 1055 30.8
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 5.1e-78 297.4 824 34.3
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.5e-77 295.8 1258 30.5
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.4e-74 284.6 619 35.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.5e-74 284.3 779 32.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.0e-73 283.1 648 35.8
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.7e-73 282.3 820 33.2
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.2e-73 282.0 853 32.2
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 5.0e-73 280.8 642 35.4
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 9.3e-72 276.6 601 36.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 9.3e-72 276.6 601 36.8
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.3e-72 276.6 828 33.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.2e-71 276.2 1117 34.6
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.1e-71 273.9 538 36.8
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.1e-71 273.9 814 32.9
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 7.9e-71 273.5 816 31.9
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 7.9e-71 273.5 849 31.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 3.3e-69 268.1 828 32.2
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-67 263.1 607 35.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.4e-67 262.7 600 35.7
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.8e-67 262.3 593 35.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.1e-67 261.2 1032 38.4
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.6e-66 258.5 827 30.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.9e-66 257.3 664 33.0
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 7.7e-66 256.9 1130 34.3
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 2.2e-65 255.4 829 31.7
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.1e-59 235.0 600 36.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 6.5e-57 227.3 826 30.8
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 9.4e-56 223.4 643 31.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.6e-55 221.5 596 31.9
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.3e-54 218.8 935 28.6
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 3.9e-54 218.0 464 37.5
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.7e-52 211.5 1024 37.1
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.9e-50 204.1 807 28.6
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.2e-48 197.2 646 30.3
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-47 196.1 790 30.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.7e-44 186.0 419 36.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.2e-41 175.6 600 30.5
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 8.5e-41 173.7 615 29.8
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 3.4e-37 161.8 629 28.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 7.5e-37 160.6 878 27.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.4e-35 155.6 543 31.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.2e-34 153.3 759 26.1
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-30 139.8 592 28.2
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 8.8e-30 137.1 532 29.9
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 9.8e-29 133.7 1041 29.5
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-28 132.5 601 26.6
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.9e-28 131.3 618 27.2
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 4.1e-27 128.3 557 27.1
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-24 120.2 753 23.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.3e-24 118.2 602 25.7
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.0e-22 113.6 540 29.1
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.5e-18 98.6 405 30.1
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 9.5e-16 90.5 641 25.4
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.6e-10 71.6 548 25.0
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 6.6e-09 67.8 1059 28.8
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 5.6e-08 64.7 111 49.5
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 6.8e-06 57.8 129 38.0
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 6.8e-06 57.8 129 38.0


User provided reference genes

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