Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1474.1 816 100.0
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1416.0 826 95.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1414.1 826 95.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1384.8 826 93.2
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 0.0e+00 1270.8 751 93.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1270.0 853 85.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 2.5e-310 1068.5 867 69.2
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 6.1e-301 1037.3 856 69.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.7e-298 1028.1 856 70.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 5.6e-270 934.5 843 66.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 8.9e-268 927.2 843 65.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.4e-251 872.1 861 61.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.8e-250 868.6 906 57.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.3e-247 859.4 885 59.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.8e-245 852.4 788 63.7
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.8e-245 851.7 841 61.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.8e-239 833.2 847 58.6
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 9.6e-238 827.4 863 58.9
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.3e-237 827.0 873 60.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 6.2e-237 824.7 840 59.2
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 4.9e-234 815.1 875 57.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.9e-233 813.1 843 57.5
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.1e-233 811.2 844 58.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 3.5e-232 808.9 844 57.8
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.0e-232 808.1 876 57.0
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.0e-231 807.4 844 58.2
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.3e-230 802.0 884 56.8
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.3e-229 800.4 869 58.5
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-227 793.9 876 55.6
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.2e-226 789.6 861 58.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.2e-226 789.6 844 57.6
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.1e-225 787.3 912 53.8
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.9e-225 786.6 831 57.0
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-224 783.5 827 58.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.3e-223 780.4 877 54.3
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 3.0e-223 779.2 838 58.4
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 6.7e-223 778.1 880 53.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 8.7e-223 777.7 882 55.0
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.3e-222 775.4 859 53.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 7.4e-222 774.6 877 53.8
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 6.9e-220 768.1 870 57.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 4.5e-219 765.4 874 55.1
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.6e-219 764.6 764 61.0
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.9e-215 752.3 872 57.2
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 5.1e-215 751.9 873 53.6
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 6.7e-215 751.5 887 54.3
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.3e-214 748.8 766 60.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 4.8e-213 745.3 877 56.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 4.8e-213 745.3 873 52.8
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.3e-213 745.0 879 54.2
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.2e-213 744.6 868 53.3
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.1e-212 744.2 920 51.4
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.1e-212 742.3 885 52.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.3e-212 741.9 840 54.4
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 6.5e-210 734.9 869 55.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.9e-209 733.4 868 54.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.9e-209 733.4 846 56.4
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.1e-206 724.2 842 54.2
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-204 717.6 868 54.1
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.4e-204 716.5 871 54.1
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.9e-203 711.8 869 54.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.2e-201 706.1 874 51.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 9.4e-201 704.5 866 53.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.7e-200 702.2 837 54.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.1e-200 701.8 868 52.5
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.2e-199 698.7 752 57.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.8e-196 690.3 866 50.3
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.1e-196 689.5 869 53.7
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 7.0e-196 688.3 906 50.4
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.5e-194 681.8 824 51.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.9e-193 680.2 866 53.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.2e-193 678.3 842 53.0
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.2e-192 677.6 856 52.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.0e-191 672.9 866 53.0
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.3e-189 665.2 906 50.8
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.8e-188 663.7 799 51.7
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.9e-185 653.7 858 49.8
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.7e-184 649.8 894 47.3
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.0e-184 648.3 862 49.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.0e-182 643.7 845 52.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 4.4e-182 642.5 811 54.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 9.8e-182 641.3 883 50.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 3.7e-181 639.4 842 50.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.4e-180 636.7 467 75.8
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.9e-178 629.8 859 49.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.9e-178 629.8 836 51.7
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.2e-176 624.4 852 49.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.1e-176 623.6 862 48.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 8.0e-176 621.7 885 47.7
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 6.8e-175 618.6 778 51.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.4e-172 609.0 662 56.3
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 6.6e-170 602.1 862 49.1
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.5e-169 600.1 872 46.7
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 5.6e-169 599.0 867 46.8
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 6.1e-168 595.5 843 45.9
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 5.7e-166 589.0 672 54.8
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.4e-164 582.4 860 46.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 7.0e-164 582.0 842 48.6
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.0e-163 580.5 814 47.9
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.7e-162 577.4 804 48.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.3e-162 577.0 875 47.2
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 6.6e-162 575.5 725 50.1
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.4e-158 563.1 843 48.3
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 9.8e-158 561.6 801 49.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.0e-150 537.3 616 53.4
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-149 534.6 837 45.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 6.4e-149 532.3 779 47.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.0e-147 525.8 896 44.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 7.8e-147 525.4 684 50.4
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.0e-146 523.5 694 49.1
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.1e-143 515.0 748 50.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.0e-142 510.8 742 49.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 5.8e-142 509.2 790 44.9
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 7.6e-142 508.8 790 45.2
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 4.6e-139 499.6 741 49.9
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.9e-138 496.5 828 43.4
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.6e-138 495.7 744 48.5
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.6e-136 491.1 766 48.6
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.8e-136 490.3 747 49.3
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 9.3e-132 475.3 367 74.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.5e-129 467.2 743 47.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.5e-129 467.2 874 40.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.3e-125 454.9 861 41.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.5e-121 440.7 813 39.5
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 4.8e-120 436.4 839 40.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 6.2e-120 436.0 842 40.1
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-119 435.3 738 46.2
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.4e-119 434.1 741 46.0
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.0e-119 433.3 739 46.3
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-118 431.4 737 47.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 8.4e-117 425.6 744 47.6
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 4.6e-115 419.9 738 45.8
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.8e-114 417.9 739 45.5
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 5.3e-111 406.4 299 73.9
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.5e-110 403.3 822 38.1
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.3e-105 386.7 706 44.3
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 4.5e-94 350.1 318 62.3
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 4.5e-94 350.1 318 62.3
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 6.1e-91 339.7 415 54.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 4.4e-81 307.0 921 34.1
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 9.1e-79 299.3 655 40.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.6e-67 260.8 786 36.0
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-64 251.9 736 34.9
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 4.5e-62 243.8 420 40.7
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.6e-61 240.0 815 30.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 4.7e-59 233.8 761 31.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.1e-55 222.6 349 46.7
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.0e-46 190.3 804 26.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 4.0e-42 177.6 139 73.4
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 5.8e-41 173.7 151 62.3
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-40 172.6 151 62.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.1e-34 151.4 212 46.2
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-33 147.5 167 50.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.5e-28 131.7 129 58.1
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 5.2e-26 124.0 177 44.6
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.5e-22 111.3 114 52.6
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 5.6e-20 104.0 94 61.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 5.8e-17 94.0 128 43.8
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 9.9e-17 93.2 129 42.6
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.9e-16 90.9 50 94.0
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.4e-16 90.1 204 37.3
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.4e-15 89.4 213 36.6
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 2.7e-14 85.1 463 27.2
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.7e-14 85.1 124 45.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 4.6e-14 84.3 397 29.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.0e-13 81.6 90 50.0
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 5.1e-13 80.9 90 50.0
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 5.1e-13 80.9 163 39.9
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-12 79.0 206 35.0
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.4e-10 72.8 198 32.8
RcHm_v2.0_Chr1g0382591 Rosa chinensis HOM05D003640 ORTHO05D345170 5.3e-10 70.9 74 55.4
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 5.8e-09 67.4 188 34.0
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 3.8e-08 64.7 60 56.7
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.8e-08 64.7 49 67.3
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 6.4e-08 63.9 77 42.9
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 6.4e-08 63.9 76 43.4
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 8.4e-08 63.5 129 39.5
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 1.4e-07 62.8 95 42.1
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 7.1e-07 60.5 97 43.3


User provided reference genes

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