Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.5e-86 320.5 160 100.0
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 3.5e-83 311.6 160 96.9
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.5e-83 311.6 160 96.9
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.6e-82 307.4 160 94.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.5e-81 306.2 160 94.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 7.5e-78 293.9 160 91.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.9e-73 279.3 160 86.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 6.1e-72 274.2 160 86.2
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-71 272.7 160 86.9
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.0e-66 256.9 152 86.8
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 6.6e-58 227.6 164 70.7
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.9e-57 226.1 164 73.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 5.6e-57 224.6 164 73.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.6e-56 221.9 164 73.2
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.3e-55 219.2 164 69.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.1e-55 218.8 163 69.9
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.4e-54 215.3 165 69.7
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.4e-54 214.9 164 70.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.4e-54 214.9 164 67.1
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.3e-53 213.4 164 66.5
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.3e-53 213.4 167 67.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.2e-53 212.6 164 70.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.7e-53 211.8 163 68.7
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.7e-53 211.8 163 68.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.9e-53 211.5 164 69.5
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 4.9e-53 211.5 163 69.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.9e-53 211.5 163 68.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 8.3e-53 210.7 159 69.2
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.9e-52 209.5 165 66.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.4e-52 209.1 165 68.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.2e-52 208.8 163 67.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.2e-52 208.8 164 65.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.4e-52 208.0 164 68.3
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 9.2e-52 207.2 163 66.9
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.2e-52 207.2 163 68.1
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.2e-51 206.8 164 67.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.2e-51 206.8 161 68.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.2e-51 206.8 165 69.1
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.1e-51 206.1 166 66.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.5e-51 205.3 165 68.5
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.6e-51 204.9 164 67.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 6.0e-51 204.5 164 64.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.3e-50 203.4 165 63.6
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.3e-50 203.4 163 64.4
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.0e-50 202.2 164 64.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.0e-50 202.2 164 67.7
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 5.1e-50 201.4 163 63.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.1e-50 201.4 163 65.0
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 6.6e-50 201.1 161 67.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.6e-50 201.1 161 68.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 8.6e-50 200.7 164 64.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.9e-49 199.5 163 64.4
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.5e-49 199.1 165 63.0
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.5e-49 199.1 164 63.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.3e-49 198.7 154 66.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.3e-49 198.7 163 65.0
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.3e-49 198.4 163 65.0
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.6e-49 198.0 162 66.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.6e-49 198.0 162 66.7
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.6e-49 198.0 163 65.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.6e-48 196.4 164 62.2
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.6e-48 196.4 169 62.1
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.6e-48 195.3 165 61.8
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.1e-48 194.1 165 63.6
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-47 193.7 162 61.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.4e-47 193.4 165 63.6
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.0e-47 191.8 158 63.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.0e-47 191.8 165 61.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 5.2e-47 191.4 158 62.0
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 6.8e-47 191.0 158 60.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 8.9e-47 190.7 164 61.0
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 8.9e-47 190.7 163 61.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.5e-46 189.9 165 61.2
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.0e-46 189.5 156 62.8
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.4e-46 188.3 164 60.4
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.4e-46 188.3 165 60.0
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.4e-46 188.3 158 61.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 7.6e-46 187.6 166 60.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.6e-46 187.6 165 59.4
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.2e-45 186.0 166 58.4
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.4e-45 184.5 166 58.4
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.4e-45 184.1 166 60.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 8.4e-45 184.1 164 58.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-44 183.7 158 60.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.4e-44 183.3 166 57.2
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.2e-44 181.8 166 56.6
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.4e-44 181.4 165 57.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 7.1e-44 181.0 170 54.7
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.2e-44 180.6 159 62.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.7e-43 179.1 166 58.4
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 4.6e-43 178.3 166 56.0
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 4.6e-43 178.3 166 56.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.6e-43 178.3 165 58.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.0e-43 177.9 166 56.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 7.8e-43 177.6 163 57.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.3e-42 176.8 163 62.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.3e-42 176.0 159 56.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.3e-42 176.0 168 55.4
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.3e-42 176.0 164 57.3
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 3.0e-42 175.6 166 55.4
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.0e-42 175.6 166 55.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.1e-42 174.9 166 59.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.6e-42 174.5 158 58.2
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.7e-42 174.1 168 55.4
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.5e-41 172.6 166 57.8
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 9.6e-41 170.6 155 56.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.6e-40 169.9 131 65.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.7e-40 168.3 132 66.7
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.1e-39 167.2 122 73.0
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 7.6e-38 161.0 136 62.5
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 9.9e-38 160.6 126 65.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.8e-37 158.7 166 51.2
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 6.4e-37 157.9 159 53.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-35 152.9 166 53.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.1e-35 152.9 166 53.0
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.7e-34 149.8 163 52.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-33 146.7 160 50.6
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-33 146.0 122 57.4
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.6e-33 144.8 123 56.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.4e-31 139.4 157 44.6
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.0e-31 138.7 157 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.5e-30 135.2 159 45.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.9e-29 132.5 125 56.0
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 4.9e-29 131.7 165 47.9
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.1e-28 130.6 119 55.5
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.4e-28 128.3 113 55.8
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.1e-27 126.3 96 59.4
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.1e-27 126.3 124 54.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.1e-27 126.3 124 46.8
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-27 125.9 166 47.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-27 125.9 166 47.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-27 125.9 166 47.6
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 6.0e-27 124.8 111 55.9
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.0e-26 124.0 170 46.5
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.8e-26 123.2 152 48.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.6e-25 118.2 120 45.0
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.6e-24 116.7 151 43.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.7e-24 115.5 133 45.9
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.6e-22 109.4 90 62.2
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.3e-21 107.1 66 77.3
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 6.4e-21 104.8 170 42.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 9.3e-20 100.9 76 64.5
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-19 100.5 146 40.4
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 6.7e-18 94.7 70 61.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.8e-13 79.0 110 40.9
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.4e-12 77.0 100 39.0
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 3.2e-12 75.9 83 54.2
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.1e-12 74.7 62 69.4
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 9.3e-12 74.3 81 51.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 9.3e-12 74.3 69 65.2
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.6e-11 73.6 163 36.2
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.1e-11 73.2 58 72.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.1e-11 73.2 58 72.4
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.6e-11 72.0 67 67.2
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-10 70.5 62 67.7
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.9e-10 68.9 63 44.4
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.7e-10 67.8 85 52.9
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.3e-09 65.9 54 70.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 4.8e-08 62.0 119 33.6
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-07 60.8 62 58.1
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.1e-07 60.8 107 35.5
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.1e-07 58.9 65 40.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.0e-07 57.8 65 53.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 7.7e-06 54.7 63 49.2


User provided reference genes

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