Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.5e-192 675.2 336 100.0
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.4e-141 505.4 284 90.5
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 6.5e-140 501.1 284 89.8
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.8e-137 490.7 284 89.4
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.5e-133 479.9 284 85.9
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.7e-132 476.5 308 80.8
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 7.2e-123 444.5 284 78.2
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.0e-121 440.7 283 77.4
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.7e-119 433.3 284 76.1
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 9.4e-115 417.5 284 72.5
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.4e-113 413.7 284 71.5
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.8e-113 413.3 284 71.8
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 6.8e-113 411.4 284 71.8
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 8.8e-113 411.0 284 71.8
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 8.8e-113 411.0 285 71.6
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.6e-112 409.5 285 72.6
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 4.4e-112 408.7 284 71.5
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.3e-111 407.1 284 71.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.7e-111 406.8 285 71.2
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.7e-111 406.8 285 71.2
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 3.7e-111 405.6 285 71.6
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 4.8e-111 405.2 284 70.8
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 6.3e-111 404.8 284 71.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.1e-110 404.1 284 70.4
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 1.1e-110 404.1 284 71.5
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 3.1e-110 402.5 284 70.1
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 5.4e-110 401.7 285 70.5
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.0e-110 401.4 284 69.7
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.0e-110 401.4 284 69.7
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 9.1e-110 401.0 284 70.8
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.6e-109 400.2 284 69.4
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.0e-109 399.8 284 71.8
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 2.7e-109 399.4 285 69.5
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.7e-109 399.4 285 69.8
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 3.5e-109 399.1 285 70.5
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 3.5e-109 399.1 284 69.0
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.9e-109 398.3 285 69.1
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 7.7e-109 397.9 285 68.1
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 7.7e-109 397.9 285 69.8
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.3e-108 397.1 285 70.2
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.3e-108 397.1 284 68.3
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.7e-108 396.7 284 69.7
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.7e-108 396.7 284 70.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 2.9e-108 396.0 285 70.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.9e-108 396.0 285 70.9
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 3.8e-108 395.6 286 68.9
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.6e-108 394.8 284 69.0
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.5e-107 392.9 285 69.1
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 4.2e-107 392.1 285 68.8
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 9.5e-107 391.0 284 69.7
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 2.8e-106 389.4 285 69.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 3.6e-106 389.0 285 67.0
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 4.7e-106 388.7 285 67.0
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 4.7e-106 388.7 285 67.0
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 6.1e-106 388.3 285 67.7
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 2.3e-105 386.3 343 60.3
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 6.8e-105 384.8 285 67.4
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 8.9e-105 384.4 285 67.7
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 7.5e-104 381.3 285 67.7
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 9.8e-104 380.9 284 67.3
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 4.9e-103 378.6 285 65.6
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 6.3e-103 378.3 285 66.7
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 8.3e-103 377.9 285 68.8
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.4e-102 377.1 285 67.7
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 9.2e-102 374.4 285 64.9
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.5e-101 372.5 285 67.4
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.5e-101 372.1 262 70.2
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.3e-100 369.8 285 64.2
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 6.6e-100 368.2 285 63.9
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.1e-99 367.5 285 63.5
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.9e-99 366.7 285 63.5
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.9e-99 366.7 285 63.5
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 5.6e-99 365.2 285 63.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 9.5e-99 364.4 285 63.2
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.2e-98 364.0 285 63.9
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.2e-98 364.0 285 63.2
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.6e-98 363.6 285 63.5
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 6.1e-98 361.7 285 63.2
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.0e-98 361.3 285 62.5
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.0e-98 361.3 285 62.5
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.4e-97 360.5 285 61.8
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 2.3e-97 359.8 285 62.1
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 5.2e-97 358.6 282 64.9
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 6.8e-97 358.2 266 65.4
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 6.8e-97 358.2 285 62.5
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 6.8e-97 358.2 285 63.5
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 8.9e-97 357.8 285 62.8
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 3.4e-96 355.9 256 69.5
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.7e-95 353.6 283 62.9
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 8.3e-95 351.3 284 64.4
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.1e-94 350.9 285 60.7
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.4e-94 350.5 308 56.8
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.9e-94 350.1 323 55.7
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.4e-94 348.6 285 59.6
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.4e-94 348.6 285 59.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.7e-93 346.3 302 59.3
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.5e-93 345.9 285 62.5
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 4.6e-93 345.5 285 58.9
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.3e-89 333.2 278 61.9
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.1e-86 324.3 263 61.2
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 5.6e-83 312.0 231 66.2
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.2e-81 305.4 285 55.8
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.5e-80 303.9 224 68.8
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.4e-78 297.4 285 56.5
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 1.6e-77 293.9 224 66.1
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 2.1e-77 293.5 250 60.0
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.4e-73 280.8 284 52.8
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.1e-67 261.2 279 50.2
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.5e-67 260.8 289 48.4
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.3e-67 259.2 278 49.3
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 2.1e-61 240.4 277 47.7
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-60 237.3 150 73.3
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 8.1e-58 228.4 150 72.0
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.1e-51 208.0 277 40.4
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 1.0e-44 184.9 301 39.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 7.6e-40 168.7 166 51.8
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.3e-39 167.9 148 57.4
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 8.4e-39 165.2 148 57.4
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 8.4e-39 165.2 275 34.2
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 3.0e-36 156.8 211 47.9
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 5.7e-35 152.5 118 61.9
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.5e-30 137.1 66 100.0
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.3e-27 126.7 100 59.0
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 5.3e-17 92.8 74 64.9
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 9.4e-14 82.0 53 75.5
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.7e-13 80.5 92 46.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 3.0e-12 77.0 54 72.2
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 1.5e-06 58.2 114 38.6


User provided reference genes

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