Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-140 502.7 257 100.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.5e-140 500.4 257 99.2
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.5e-140 500.4 257 99.2
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.1e-139 500.0 257 99.2
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.2e-139 498.0 257 98.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.2e-139 498.0 257 98.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 7.9e-138 493.8 257 97.3
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.5e-123 445.7 261 87.7
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 4.7e-122 441.4 263 84.4
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.6e-120 435.6 261 86.2
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.5e-104 383.3 261 76.2
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.6e-104 382.5 263 75.7
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.3e-103 380.2 261 75.5
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.1e-102 377.1 262 73.3
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 7.7e-101 370.9 263 74.1
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.0e-100 370.5 267 72.7
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 5.0e-100 368.2 264 72.3
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-99 367.1 190 99.5
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-99 366.3 266 73.7
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.3e-99 365.2 262 75.6
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 7.3e-99 364.4 259 73.0
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 9.5e-99 364.0 259 73.0
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 9.5e-99 364.0 259 73.0
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.6e-98 363.2 261 72.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 6.1e-98 361.3 259 72.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.0e-97 360.5 263 71.5
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.4e-97 360.1 262 72.1
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.3e-97 359.4 262 71.8
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.0e-97 359.0 257 73.2
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 4.0e-97 358.6 263 71.1
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 6.8e-97 357.8 262 71.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.2e-96 357.1 263 70.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.4e-96 355.5 264 68.2
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.7e-96 354.8 263 70.7
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.7e-95 353.2 261 71.3
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.2e-95 352.8 264 70.8
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.2e-95 352.8 264 70.8
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.9e-95 352.4 265 68.7
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 3.7e-95 352.1 263 68.8
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.9e-95 351.7 264 70.5
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 8.3e-95 350.9 268 70.9
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 8.3e-95 350.9 270 70.0
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.4e-94 350.1 260 70.0
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.8e-94 349.7 264 68.6
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 2.4e-94 349.4 265 69.4
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.4e-94 349.4 270 70.4
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 3.2e-94 349.0 260 71.2
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 4.1e-94 348.6 255 69.8
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.1e-94 348.6 265 69.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.0e-93 346.3 265 68.3
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 4.6e-93 345.1 261 69.7
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 1.0e-92 344.0 260 70.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-92 344.0 259 69.1
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.0e-92 344.0 258 67.8
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.3e-92 343.6 261 70.5
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.3e-92 342.8 259 68.0
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 6.6e-92 341.3 260 69.2
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.1e-91 340.5 266 69.2
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.9e-91 339.7 252 71.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.9e-91 339.7 258 70.2
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.5e-91 339.3 262 69.8
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.5e-91 339.3 260 69.6
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 3.3e-91 339.0 264 67.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 3.3e-91 339.0 258 68.6
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 4.3e-91 338.6 262 68.3
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.3e-91 338.6 252 71.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.2e-90 337.0 254 70.1
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.6e-90 336.7 264 66.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 4.7e-90 335.1 241 72.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.2e-90 334.7 255 69.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 8.0e-90 334.3 243 71.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 8.0e-90 334.3 243 71.2
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 8.0e-90 334.3 265 64.9
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.0e-89 334.0 261 67.0
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.8e-89 333.2 265 66.4
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 3.1e-89 332.4 253 68.4
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.1e-89 332.4 262 69.5
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.0e-89 332.0 261 69.0
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 4.0e-89 332.0 270 64.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.0e-88 329.7 258 68.2
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.0e-88 329.7 262 66.0
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 2.6e-88 329.3 262 65.6
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 2.6e-88 329.3 258 68.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.4e-88 328.9 261 67.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.4e-88 328.9 262 66.4
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 4.4e-88 328.6 266 66.2
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 7.5e-88 327.8 257 68.1
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 7.5e-88 327.8 265 66.0
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 9.8e-88 327.4 266 66.9
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.9e-87 325.1 262 68.3
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 4.1e-86 322.0 258 65.5
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.6e-85 320.1 261 65.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.0e-84 317.4 241 66.4
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 6.6e-84 314.7 226 70.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.6e-83 311.6 249 64.3
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 5.2e-81 305.1 308 57.1
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 5.2e-81 305.1 234 69.2
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.6e-80 302.8 195 74.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.4e-78 297.0 261 60.5
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.4e-78 297.0 226 65.5
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 7.1e-78 294.7 262 63.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.1e-75 287.3 197 74.1
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.1e-75 287.3 197 74.1
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 8.1e-74 281.2 254 60.2
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 5.8e-72 275.0 179 77.1
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 9.9e-72 274.2 217 62.2
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 7.1e-70 268.1 215 60.9
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.2e-64 250.8 215 59.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.6e-64 249.6 234 54.3
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.4e-62 243.8 238 55.9
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.4e-62 243.0 215 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.2e-61 240.7 191 60.2
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.0e-60 236.1 223 57.8
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.1e-60 235.3 180 62.8
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.4e-57 226.5 176 70.5
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.6e-53 213.8 141 70.9
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.5e-48 197.2 132 75.8
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.4e-41 174.1 153 53.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.5e-40 169.1 150 63.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 3.2e-38 162.9 261 42.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 3.2e-38 162.9 261 42.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 5.5e-38 162.2 261 42.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 5.5e-38 162.2 165 47.9
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 5.7e-35 152.1 114 69.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.2e-29 134.4 89 76.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.6e-29 132.5 112 59.8
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.8e-26 122.5 179 38.0
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.8e-25 120.6 76 78.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.5e-19 100.9 79 68.4
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.2e-16 91.3 168 31.5
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.9e-16 89.0 75 62.7
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.9e-14 84.0 66 66.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.7e-13 80.1 83 57.8
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.8e-12 77.4 41 92.7
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.7e-11 71.6 60 61.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 3.7e-10 69.7 39 87.2
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.9e-07 60.1 102 41.2
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 4.2e-06 56.2 163 28.2
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 5.5e-06 55.8 48 58.3


User provided reference genes

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