Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 0.0e+00 1112.8 544 100.0
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-265 919.1 587 81.6
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.6e-250 867.5 587 77.9
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 5.2e-240 834.3 582 75.3
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-222 776.5 549 76.3
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 1.1e-216 756.9 579 66.5
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 5.5e-213 744.6 579 66.3
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.0e-200 700.7 580 61.6
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.0e-199 699.5 580 61.4
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 4.2e-197 691.8 578 60.6
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.2e-196 690.3 582 61.3
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.7e-196 689.1 578 60.7
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 7.9e-196 687.6 578 60.9
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.4e-195 686.8 578 59.7
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.1e-194 683.7 581 60.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.5e-194 683.3 579 59.2
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.5e-194 682.6 578 60.0
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 3.3e-194 682.2 578 59.5
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 7.4e-194 681.0 578 59.7
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 2.2e-193 679.5 582 59.6
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 3.7e-193 678.7 578 59.9
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.8e-192 676.4 578 59.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 3.1e-192 675.6 578 59.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 3.1e-192 675.6 578 59.3
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 9.1e-192 674.1 581 59.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 4.5e-191 671.8 578 58.7
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 5.9e-191 671.4 578 60.7
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.7e-190 669.8 585 58.5
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.7e-190 669.8 578 58.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 6.5e-190 667.9 577 59.4
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 8.5e-190 667.5 577 58.6
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.4e-189 666.8 578 59.2
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.9e-189 666.4 582 57.7
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 4.2e-189 665.2 580 58.3
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 7.2e-189 664.5 578 59.2
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.2e-188 663.7 578 59.2
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 6.1e-188 661.4 582 56.5
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.1e-188 661.4 578 58.5
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.0e-187 660.6 574 58.9
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 6.7e-187 657.9 583 58.0
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.1e-186 657.1 578 59.2
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 5.7e-186 654.8 404 81.7
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.7e-186 654.8 582 57.9
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.8e-185 652.5 582 57.4
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.8e-185 652.5 559 58.9
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 4.8e-185 651.7 582 58.2
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 8.2e-185 651.0 578 59.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.4e-184 650.2 579 58.2
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 3.1e-184 649.0 576 56.9
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 7.7e-183 644.4 581 55.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.2e-182 642.9 576 56.4
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 6.5e-182 641.3 540 60.2
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 6.5e-182 641.3 577 57.4
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.5e-181 639.4 577 55.1
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.2e-181 639.0 578 56.2
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.6e-180 636.7 548 57.7
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 2.7e-180 636.0 581 55.8
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 4.7e-180 635.2 576 56.1
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 6.1e-180 634.8 577 55.1
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 6.1e-180 634.8 587 55.7
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 6.1e-180 634.8 576 55.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 8.0e-180 634.4 636 53.6
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.0e-179 634.0 585 55.9
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.3e-179 632.9 577 54.8
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.3e-179 632.9 514 61.9
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.0e-178 629.8 577 54.6
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.7e-177 626.7 572 56.3
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.2e-177 626.3 568 55.5
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.8e-176 623.2 578 54.5
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.8e-176 623.2 578 54.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 4.1e-176 622.1 569 57.5
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 7.0e-176 621.3 578 54.8
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 2.0e-175 619.8 575 54.6
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 2.6e-175 619.4 578 55.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 4.5e-175 618.6 566 57.1
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 5.9e-175 618.2 578 54.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.3e-174 617.1 578 54.7
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.2e-174 616.3 627 54.4
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.9e-174 615.9 570 56.8
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.0e-171 605.9 603 52.7
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 6.7e-171 604.7 602 52.7
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.3e-170 602.4 566 61.8
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.3e-166 590.5 402 71.1
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.8e-166 589.0 613 51.7
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 2.5e-165 586.3 578 52.6
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.3e-161 573.9 559 53.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.8e-160 570.1 579 51.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.1e-160 568.9 748 44.8
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.2e-159 567.4 578 50.2
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.3e-157 559.3 580 51.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.4e-155 553.9 561 53.3
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 8.9e-155 551.2 503 58.3
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 5.7e-154 548.5 606 51.7
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.7e-151 539.7 504 55.6
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 4.5e-151 538.9 575 47.7
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 2.4e-144 516.5 540 52.6
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.5e-141 504.6 405 62.0
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 9.2e-136 488.0 464 52.2
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.4e-130 469.2 531 50.7
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.6e-127 460.7 375 61.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.9e-126 456.1 349 64.5
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 4.7e-124 449.1 581 42.2
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 4.2e-120 436.0 360 59.4
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 5.4e-120 435.6 538 44.2
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 8.7e-118 428.3 559 44.5
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.1e-115 419.9 390 55.9
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 2.0e-114 417.2 568 41.9
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.3e-110 403.7 251 74.9
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.1e-109 401.4 309 63.1
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.3e-108 397.9 334 59.6
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 7.4e-101 372.1 403 51.4
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 5.8e-98 362.5 604 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.2e-95 354.8 490 41.0
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 6.7e-94 349.0 231 71.0
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 6.7e-94 349.0 231 71.0
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 4.8e-92 342.8 231 69.7
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.3e-89 334.7 229 67.7
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 5.9e-82 309.3 531 38.4
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 7.9e-79 298.9 168 79.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.2e-63 248.4 171 69.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.2e-60 235.7 226 56.6
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-59 235.3 221 54.8
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.8e-57 226.9 223 55.2
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.5e-53 212.6 221 48.9
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.2e-52 211.1 516 31.2
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.8e-52 210.7 411 35.5
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.7e-52 210.3 589 29.2
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.6e-47 194.9 511 29.5
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 7.5e-45 186.0 563 28.8
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 1.4e-35 155.2 366 31.4
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.0e-35 152.9 97 80.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.2e-34 152.1 286 35.7
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.2e-31 142.1 114 59.6
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 4.0e-30 137.1 145 51.0
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 6.4e-28 129.8 77 80.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 2.7e-26 124.4 85 64.7
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.0e-25 120.9 72 86.1
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 3.0e-25 120.9 142 47.9
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.1e-23 112.8 108 54.6
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 5.8e-21 106.7 145 40.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.8e-18 96.3 68 73.5
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.0e-14 84.0 45 73.3
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.5e-13 82.0 99 48.5
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.2e-12 78.2 85 48.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.1e-11 75.9 104 37.5
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.1e-11 75.9 59 59.3
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 1.6e-10 72.0 200 33.0
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.3e-08 64.3 66 48.5
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.4e-06 58.9 62 43.5
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.0e-06 57.4 79 40.5


User provided reference genes

Program Settings