Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.4e-93 345.5 178 100.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.8e-92 340.5 178 98.3
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-91 340.1 178 98.3
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.3e-90 335.1 178 97.8
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.8e-89 332.0 178 96.6
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.8e-72 276.2 180 81.7
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 8.6e-67 257.3 180 76.7
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.0e-63 246.1 129 98.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.4e-62 240.7 129 96.9
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.1e-48 195.7 101 99.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.0e-48 195.3 105 96.2
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.6e-47 192.6 103 95.1
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.2e-46 189.5 194 58.8
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 4.0e-40 168.7 195 51.8
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 9.0e-40 167.5 189 52.4
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.3e-34 149.1 211 46.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.8e-33 145.2 188 47.3
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 8.2e-33 144.4 187 46.5
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.1e-32 144.1 159 49.7
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.4e-32 142.9 162 50.0
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 5.3e-32 141.7 215 44.2
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 6.9e-32 141.4 157 49.0
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.2e-31 140.6 153 49.7
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.5e-31 140.2 148 50.7
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.0e-31 139.8 186 47.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 4.5e-31 138.7 178 46.1
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 5.9e-31 138.3 226 42.9
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.0e-30 137.5 197 44.2
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.7e-30 136.7 176 47.2
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 6.5e-30 134.8 172 45.3
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.4e-29 133.7 211 42.7
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.2e-29 132.5 198 44.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.2e-28 130.6 149 49.0
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.1e-28 129.8 196 41.8
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.7e-28 129.4 179 47.5
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.6e-28 129.0 149 48.3
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.6e-28 128.6 196 41.8
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.1e-28 128.3 195 43.6
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 6.1e-28 128.3 163 44.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.0e-27 127.5 164 48.2
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.3e-27 127.1 211 40.8
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.3e-27 127.1 195 41.5
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.8e-27 126.7 147 49.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 2.3e-27 126.3 161 42.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 3.0e-27 125.9 203 42.4
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.7e-27 124.8 198 43.4
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.5e-26 123.6 217 40.6
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.5e-26 123.6 217 40.6
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.9e-26 123.2 177 42.4
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.5e-26 122.9 196 40.3
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 3.3e-26 122.5 151 45.0
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 4.3e-26 122.1 170 43.5
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 5.7e-26 121.7 202 41.1
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.4e-26 121.3 169 45.0
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 7.4e-26 121.3 203 41.9
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 9.7e-26 120.9 157 43.9
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 9.7e-26 120.9 208 41.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.7e-26 120.9 172 41.9
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.3e-25 120.6 195 41.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.3e-25 120.6 175 41.7
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.7e-25 120.2 157 43.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.7e-25 120.2 215 40.5
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.7e-25 120.2 195 41.0
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.8e-25 119.4 180 41.1
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.7e-25 119.0 152 46.1
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.7e-25 119.0 172 41.9
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 4.8e-25 118.6 203 38.9
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.8e-25 118.6 170 44.1
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 6.3e-25 118.2 157 42.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.3e-25 118.2 195 41.5
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 6.3e-25 118.2 153 45.8
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 6.3e-25 118.2 191 39.3
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.4e-24 117.1 159 42.1
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.4e-24 117.1 152 43.4
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.8e-24 116.7 184 41.3
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.4e-24 116.3 155 43.2
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 4.1e-24 115.5 157 42.7
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 6.9e-24 114.8 171 40.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.2e-23 114.0 185 39.5
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.2e-23 114.0 169 40.2
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.2e-23 114.0 155 42.6
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.6e-23 112.8 198 37.9
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.6e-23 112.8 149 46.3
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 7.7e-23 111.3 186 39.8
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 7.7e-23 111.3 171 43.3
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.7e-22 110.2 162 40.1
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 3.8e-22 109.0 186 39.2
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.0e-22 108.6 192 38.5
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.1e-21 107.5 172 40.7
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.2e-21 105.9 187 42.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 7.2e-21 104.8 152 42.1
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-21 104.8 193 39.9
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 7.2e-21 104.8 166 39.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 7.2e-21 104.8 193 37.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.2e-20 104.0 178 35.4
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.2e-20 104.0 178 35.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.2e-20 104.0 175 40.0
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 2.1e-20 103.2 185 37.8
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 3.6e-20 102.4 191 36.1
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 4.7e-20 102.1 169 37.9
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 7.9e-20 101.3 182 36.3
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.9e-20 101.3 202 38.1
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.0e-19 100.9 163 39.3
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.4e-19 100.5 192 37.0
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.3e-19 99.8 176 36.4
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 3.0e-19 99.4 166 35.5
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 3.0e-19 99.4 226 35.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.9e-19 99.0 188 33.0
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 5.1e-19 98.6 135 43.7
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 5.1e-19 98.6 154 39.0
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 2.0e-18 96.7 186 39.8
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.6e-18 96.3 178 42.1
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 3.3e-18 95.9 201 37.8
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.3e-18 95.9 191 34.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 7.4e-18 94.7 153 39.9
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 7.4e-18 94.7 176 40.3
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 6.3e-17 91.7 163 35.6
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.8e-16 90.1 196 33.2
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 7.7e-15 84.7 215 31.6
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.7e-14 83.6 82 53.7
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.9e-14 82.8 205 31.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.5e-14 81.3 153 33.3
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 8.5e-14 81.3 153 33.3
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.9e-13 80.1 121 38.0
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 7.2e-13 78.2 106 43.4
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-12 76.3 192 33.9
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 6.1e-12 75.1 174 32.2
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 3.0e-11 72.8 192 29.2
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 8.8e-11 71.2 162 33.3
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 8.2e-09 64.7 74 41.9
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.1e-08 62.8 114 36.0
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 5.3e-08 62.0 81 48.1
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.5e-07 58.9 183 32.8
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.5e-07 58.9 183 32.8


User provided reference genes

Program Settings