Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.9e-152 541.6 305 100.0
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.4e-117 424.9 305 80.0
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-107 394.0 305 79.0
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-104 383.3 305 77.4
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.0e-104 382.1 305 77.0
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.0e-103 379.8 305 72.8
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.1e-101 374.0 305 75.4
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.2e-101 372.5 299 76.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.7e-75 287.0 304 62.8
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 3.0e-75 286.2 297 63.3
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.9e-74 283.5 299 62.2
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.0e-72 275.8 309 54.7
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.3e-70 270.8 302 58.9
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.4e-69 266.5 306 52.9
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 4.2e-69 265.8 297 52.9
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 7.1e-69 265.0 313 51.8
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 4.6e-68 262.3 307 52.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.7e-67 258.5 308 58.1
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 7.4e-66 255.0 307 50.8
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 2.1e-65 253.4 307 51.8
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.8e-65 252.3 314 52.9
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 8.1e-65 251.5 307 50.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.0e-64 248.1 307 50.2
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.2e-63 247.7 305 51.1
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 3.4e-63 246.1 296 50.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 5.8e-63 245.4 307 49.8
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 7.6e-63 245.0 307 50.2
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.6e-63 245.0 307 49.5
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 9.9e-63 244.6 300 54.0
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.3e-62 244.2 307 49.5
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.3e-62 244.2 307 49.5
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.3e-62 244.2 307 48.5
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.7e-62 243.8 306 49.7
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 4.9e-62 242.3 304 53.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 6.4e-62 241.9 311 50.8
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 6.4e-62 241.9 313 47.9
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.1e-61 241.1 311 48.9
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.4e-61 240.7 307 48.5
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 2.4e-61 240.0 306 52.0
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.2e-61 239.2 307 49.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.1e-60 236.9 306 50.7
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 3.5e-60 236.1 305 49.8
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 3.5e-60 236.1 302 49.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 6.0e-60 235.3 214 63.6
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 7.9e-60 235.0 306 50.0
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.8e-59 233.8 305 49.5
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.8e-59 233.8 307 48.5
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.9e-59 232.6 309 51.8
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 5.1e-59 232.3 306 49.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 5.1e-59 232.3 218 67.9
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 6.7e-59 231.9 306 49.7
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 2.5e-58 229.9 310 47.1
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 4.3e-58 229.2 316 46.8
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.3e-58 229.2 298 53.4
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 7.4e-58 228.4 310 47.1
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 9.6e-58 228.0 305 48.9
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.3e-57 227.6 301 48.2
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.3e-57 227.6 309 47.2
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.3e-57 227.6 341 47.5
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.3e-57 227.6 300 49.7
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.8e-57 226.5 309 46.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 4.8e-57 225.7 218 59.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 4.8e-57 225.7 313 47.0
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 8.2e-57 224.9 306 51.0
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.8e-56 223.8 309 46.3
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.4e-56 223.4 306 47.4
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.3e-56 222.2 309 46.9
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.6e-55 219.9 308 48.7
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 2.6e-55 219.9 305 47.5
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.5e-55 219.2 311 48.2
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 4.5e-55 219.2 303 50.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 5.8e-55 218.8 308 48.4
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 5.8e-55 218.8 308 48.4
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.8e-55 218.8 305 46.9
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.0e-54 218.0 307 47.6
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.0e-54 218.0 303 46.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 3.8e-54 216.1 307 47.9
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 6.5e-54 215.3 317 47.9
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 6.5e-54 215.3 302 45.7
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 8.4e-54 214.9 307 47.9
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 8.4e-54 214.9 214 58.9
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.1e-53 214.5 306 45.8
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.5e-53 213.4 308 46.4
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.5e-53 213.4 241 56.8
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 5.5e-53 212.2 304 51.3
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.2e-52 211.1 309 51.5
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-52 210.7 301 51.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.5e-52 209.5 303 51.2
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 7.9e-52 208.4 299 47.8
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.3e-51 207.6 310 51.0
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 3.0e-51 206.5 302 46.0
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 3.0e-51 206.5 426 40.8
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 3.9e-51 206.1 310 44.2
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.5e-50 204.1 303 46.2
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.3e-50 203.0 306 51.0
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 4.3e-50 202.6 302 48.3
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.7e-50 202.2 294 45.6
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 7.4e-50 201.8 299 45.2
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.3e-49 201.1 311 46.0
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.1e-49 200.3 208 55.8
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.1e-49 200.3 303 43.9
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.8e-49 199.9 306 50.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.1e-48 198.0 319 44.2
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.1e-48 198.0 294 46.6
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 2.4e-48 196.8 299 44.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.1e-48 196.4 315 42.9
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 5.3e-48 195.7 305 43.3
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 1.2e-47 194.5 349 41.0
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.2e-47 194.5 315 42.5
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.0e-46 191.4 203 55.7
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-45 188.0 204 54.4
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 7.2e-45 185.3 324 41.7
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-44 184.5 234 49.1
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-42 177.9 221 51.1
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 3.7e-41 172.9 308 41.2
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.3e-40 169.1 192 54.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.2e-39 167.9 317 44.5
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 3.4e-39 166.4 223 47.1
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.9e-38 163.3 174 61.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 5.0e-38 162.5 301 37.9
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 6.1e-36 155.6 197 47.7
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.7e-34 149.1 181 53.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 9.7e-34 148.3 175 52.0
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 5.0e-30 136.0 165 52.7
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.5e-29 133.7 207 45.9
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-26 124.4 155 51.0
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.0e-23 114.0 153 45.8
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.3e-22 111.3 301 31.9
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.2e-21 105.5 157 42.7
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 7.2e-21 105.5 182 39.6
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 7.5e-18 95.5 215 47.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.7e-17 94.4 107 48.6
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.8e-16 90.9 61 75.4
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.6e-15 87.8 155 43.9
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.0e-14 85.1 177 39.5
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-14 84.7 55 80.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 6.8e-11 72.4 61 59.0
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.8e-09 67.0 172 31.4
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 6.3e-09 65.9 98 44.9
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 6.3e-09 65.9 133 37.6
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 4.1e-08 63.2 100 40.0
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 5.4e-08 62.8 158 34.8
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 1.0e-06 58.5 119 37.8
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.7e-06 57.8 185 33.0
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.7e-06 57.8 185 33.0


User provided reference genes

Program Settings