Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.9e-122 442.6 228 100.0
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-113 412.9 243 89.7
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 5.6e-111 404.4 247 88.3
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.6e-110 401.7 247 88.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 5.8e-108 394.4 255 85.9
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.1e-102 375.9 254 82.7
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 6.2e-86 321.2 260 71.2
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 8.8e-56 221.1 232 61.6
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 2.6e-52 209.5 232 57.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.5e-47 193.7 249 49.8
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.5e-47 193.7 237 52.7
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 6.3e-46 188.3 162 62.3
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 7.0e-45 184.9 159 62.3
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 4.5e-44 182.2 159 65.4
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.0e-43 181.0 182 56.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.3e-43 180.6 240 49.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.3e-43 180.6 240 49.6
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.8e-43 179.1 156 62.2
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 8.5e-43 177.9 252 48.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 8.5e-43 177.9 161 64.6
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 8.5e-43 177.9 229 50.7
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.5e-42 176.4 167 60.5
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 2.7e-41 172.9 225 48.9
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 2.7e-41 172.9 161 59.6
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 3.6e-41 172.6 155 60.6
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 6.1e-41 171.8 162 59.9
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 8.0e-41 171.4 214 51.4
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 8.0e-41 171.4 160 61.9
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 8.0e-41 171.4 155 60.6
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.0e-40 171.0 278 44.2
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.4e-40 170.6 153 60.1
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 1.4e-40 170.6 155 60.6
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.8e-40 170.2 179 53.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.8e-40 170.2 175 53.7
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 8.8e-40 167.9 179 53.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.0e-39 166.8 159 57.9
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 2.6e-39 166.4 160 58.8
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 3.4e-39 166.0 176 59.7
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 3.4e-39 166.0 160 56.2
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 5.7e-39 165.2 227 48.0
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 7.5e-39 164.9 171 54.4
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.7e-38 162.5 228 46.5
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 6.3e-38 161.8 224 47.8
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.8e-37 160.2 291 40.9
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.6e-36 157.1 191 49.7
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.6e-36 157.1 232 46.1
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.6e-36 157.1 232 48.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 2.0e-36 156.8 161 59.0
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 5.9e-36 155.2 160 55.0
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 7.7e-36 154.8 186 55.4
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.7e-36 154.8 158 55.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.7e-35 153.7 158 55.7
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.3e-35 153.3 223 44.4
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.0e-35 152.1 159 54.1
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 5.0e-35 152.1 290 40.0
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 5.0e-35 152.1 245 44.1
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 6.6e-35 151.8 161 54.7
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.5e-34 150.6 280 40.7
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.5e-34 150.6 160 55.6
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 3.3e-34 149.4 254 45.7
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 7.2e-34 148.3 226 46.0
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.2e-33 147.5 173 52.6
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-33 147.5 193 47.2
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 2.8e-33 146.4 161 53.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 4.7e-33 145.6 186 50.0
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 8.0e-33 144.8 264 41.7
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.0e-32 144.4 161 54.7
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.0e-32 144.4 182 48.9
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.0e-32 144.4 211 46.9
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 1.8e-32 143.7 152 52.0
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.8e-32 143.7 161 53.4
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 5.2e-32 142.1 261 42.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.5e-31 140.6 168 49.4
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.6e-31 139.8 177 49.7
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 7.5e-31 138.3 175 49.7
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-30 137.5 181 49.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 2.2e-30 136.7 149 52.3
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 2.9e-30 136.3 195 43.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-30 136.0 273 38.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.7e-30 136.0 140 56.4
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 6.3e-30 135.2 202 46.5
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 8.3e-30 134.8 149 51.7
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.4e-29 134.0 221 42.5
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.4e-29 134.0 221 43.0
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.8e-29 133.7 167 49.1
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 3.2e-29 132.9 159 50.3
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.1e-29 132.5 159 50.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.2e-28 131.0 155 55.5
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 2.0e-28 130.2 246 36.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 2.7e-28 129.8 232 44.4
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.5e-28 129.4 157 47.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 7.8e-28 128.3 234 42.3
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.3e-27 127.5 212 42.9
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.3e-27 127.5 232 43.1
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.3e-27 127.5 151 52.3
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 5.0e-27 125.6 154 49.4
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 5.0e-27 125.6 144 50.0
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 6.6e-27 125.2 222 43.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 8.6e-27 124.8 247 40.9
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-26 124.4 144 48.6
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.5e-26 124.0 133 52.6
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.9e-26 123.6 218 42.7
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.9e-26 123.6 245 37.6
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 2.5e-26 123.2 197 45.2
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 3.3e-26 122.9 144 51.4
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.2e-25 120.9 221 40.7
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.6e-25 120.6 159 47.2
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 8.0e-25 118.2 141 52.5
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 5.2e-24 115.5 196 40.8
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 3.4e-23 112.8 141 48.9
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-22 110.5 261 35.2
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.4e-21 107.5 165 44.2
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 5.0e-19 99.0 99 58.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.9e-18 97.1 263 35.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 2.5e-18 96.7 226 33.6
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.2e-17 94.4 229 36.7
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.2e-17 94.4 173 38.7
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.6e-17 92.8 215 34.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.7e-17 92.4 194 35.1
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 6.2e-17 92.0 155 41.3
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 6.8e-16 88.6 206 38.3
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.9e-16 88.2 88 54.5
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.3e-14 84.3 169 37.3
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 3.7e-14 82.8 167 36.5
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-13 81.3 144 40.3
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.9e-13 80.5 109 47.7
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 1.9e-13 80.5 65 64.6
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.2e-12 77.8 79 54.4
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.0e-11 74.7 226 33.6
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-11 73.9 239 28.5
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.0e-11 73.2 56 62.5
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 8.6e-11 71.6 171 33.3
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 1.1e-10 71.2 91 48.4
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.6e-09 67.4 88 48.9
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.6e-09 67.4 63 55.6
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.4e-08 64.3 88 48.9
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 6.8e-08 62.0 145 32.4
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.2e-07 61.2 264 29.9
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 1.5e-07 60.8 86 46.5
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 2.2e-06 57.0 178 33.7


User provided reference genes

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