Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.7e-109 397.9 204 100.0
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.8e-107 390.2 204 98.0
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.2e-106 389.0 204 97.5
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 4.9e-106 387.9 204 97.1
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.9e-106 387.9 204 97.1
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 8.3e-106 387.1 204 98.5
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 3.9e-103 378.3 204 95.1
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 2.9e-90 335.5 207 85.0
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 3.2e-89 332.0 202 83.2
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 1.0e-87 327.0 197 84.3
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 3.0e-87 325.5 195 85.1
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 6.6e-87 324.3 195 83.6
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 1.5e-86 323.2 198 82.3
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 5.6e-86 321.2 198 81.3
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.4e-84 316.6 197 84.3
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.8e-84 316.2 197 84.3
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 2.3e-84 315.8 197 84.3
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 6.8e-84 314.3 199 79.9
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.5e-83 313.2 201 79.1
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 1.5e-83 313.2 204 77.9
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 3.4e-83 312.0 206 78.2
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 3.4e-83 312.0 207 77.3
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 3.4e-83 312.0 204 77.9
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 4.4e-83 311.6 200 80.0
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 5.8e-83 311.2 199 82.9
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 9.9e-83 310.5 202 77.7
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 2.2e-82 309.3 197 82.2
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 4.9e-82 308.1 196 81.6
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 1.9e-81 306.2 196 78.1
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 1.9e-81 306.2 207 77.3
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 2.4e-81 305.8 198 79.3
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 9.2e-81 303.9 208 77.4
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.6e-80 303.1 197 79.7
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 7.8e-80 300.8 195 79.0
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 7.8e-80 300.8 208 75.0
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.0e-79 300.4 202 74.3
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.0e-79 300.4 205 76.1
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 2.1e-77 292.7 195 74.9
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 2.8e-77 292.4 204 72.5
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 2.8e-77 292.4 202 72.3
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 2.4e-76 289.3 200 71.0
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 4.0e-76 288.5 207 71.0
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 6.8e-76 287.7 206 74.3
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 8.9e-76 287.3 206 74.8
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 8.9e-76 287.3 195 76.4
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.4e-75 285.4 204 76.5
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 9.9e-75 283.9 205 71.2
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 2.9e-74 282.3 195 73.8
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.1e-73 280.4 197 73.1
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 1.9e-73 279.6 197 72.6
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 1.9e-73 279.6 197 72.6
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 2.4e-73 279.3 198 77.3
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.4e-73 279.3 194 74.2
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 4.2e-73 278.5 206 71.8
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 4.2e-73 278.5 212 69.8
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 4.2e-73 278.5 200 73.0
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 5.4e-73 278.1 197 72.1
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 9.3e-73 277.3 201 71.6
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 9.3e-73 277.3 203 70.9
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 2.1e-72 276.2 197 71.6
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.1e-72 276.2 204 70.6
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 2.7e-72 275.8 198 77.3
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 6.0e-72 274.6 205 69.8
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 7.8e-72 274.2 206 69.4
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 1.3e-71 273.5 195 71.8
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 1.3e-71 273.5 199 70.4
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.7e-71 273.1 209 67.0
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 5.1e-71 271.6 208 68.3
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 8.7e-71 270.8 202 67.8
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 2.5e-70 269.2 205 69.3
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 7.3e-70 267.7 205 67.8
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 1.3e-69 266.9 205 67.8
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.6e-69 266.5 202 66.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 2.8e-69 265.8 201 69.2
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 2.8e-69 265.8 196 69.4
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 2.8e-69 265.8 208 66.3
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 6.2e-69 264.6 205 68.3
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 8.1e-69 264.2 205 67.8
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.3e-68 261.5 202 66.8
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 9.0e-68 260.8 196 68.4
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 9.0e-68 260.8 202 66.3
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 3.4e-67 258.8 204 66.7
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.9e-65 253.1 185 71.4
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 1.9e-65 253.1 196 69.9
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 3.5e-64 248.8 226 58.8
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 1.0e-63 247.3 192 68.2
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 1.7e-63 246.5 205 62.0
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 2.3e-63 246.1 202 62.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 1.9e-62 243.0 204 62.3
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.6e-61 240.0 225 57.3
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-60 236.9 184 65.8
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 4.6e-56 221.9 202 60.4
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 1.8e-55 219.9 194 61.3
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 8.7e-55 217.6 143 78.3
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 2.8e-53 212.6 203 59.1
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 2.8e-53 212.6 180 62.2
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 1.2e-51 207.2 176 61.9
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 2.2e-42 176.4 142 65.5
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 4.2e-41 172.2 201 49.3
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 9.3e-41 171.0 143 62.2
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.0e-39 167.5 210 46.7
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 8.7e-39 164.5 135 64.4
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 4.8e-37 158.7 169 55.6
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 7.2e-25 118.2 92 64.1
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 6.1e-24 115.2 86 66.3
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.8e-20 103.6 148 43.9
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 7.2e-17 91.7 144 37.5
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 2.1e-16 90.1 59 76.3
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 2.7e-16 89.7 66 66.7
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 4.7e-16 89.0 198 38.9
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 1.0e-15 87.8 66 65.2
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.7e-15 85.1 71 57.7
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 2.0e-14 83.6 45 88.9
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.2e-13 80.1 70 57.1
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.2e-13 80.1 70 57.1
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.2e-13 80.1 70 58.6
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.2e-13 80.1 70 57.1
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.8e-13 79.0 70 57.1
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.4e-12 77.4 70 55.7
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.8e-12 77.0 70 55.7
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 6.5e-10 68.6 95 48.4
Nitab4.5_0006622g0070 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.7e-06 55.5 66 51.5


User provided reference genes

Program Settings