Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.9e-152 540.8 267 100.0
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.4e-150 533.5 267 98.1
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 4.7e-149 531.2 267 97.8
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 1.8e-137 492.7 267 91.8
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 3.7e-122 441.8 265 83.4
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.7e-122 441.8 265 83.0
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.3e-122 441.0 259 83.8
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.4e-121 439.9 265 83.0
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 2.7e-120 435.6 270 80.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.7e-120 434.1 265 81.9
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 3.7e-114 415.2 259 79.9
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 6.6e-111 404.4 259 77.2
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.0e-108 397.1 268 72.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 2.0e-107 392.9 256 73.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 2.6e-107 392.5 271 71.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 2.2e-106 389.4 263 73.0
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.9e-106 389.0 270 71.1
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 4.9e-106 388.3 263 72.6
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 6.4e-106 387.9 255 73.7
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 8.3e-106 387.5 256 72.3
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.4e-105 386.0 251 72.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 3.5e-104 382.1 255 71.8
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 6.0e-104 381.3 270 68.5
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 7.8e-104 380.9 259 72.6
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 5.0e-103 378.3 255 70.6
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 8.6e-103 377.5 255 71.0
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 3.3e-102 375.6 255 70.6
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 7.3e-102 374.4 256 70.7
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 2.1e-101 372.9 305 63.0
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 4.7e-101 371.7 255 71.0
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 8.1e-101 370.9 258 72.1
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 8.1e-101 370.9 274 66.4
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.8e-100 369.8 260 69.6
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.3e-100 369.4 252 70.2
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 3.1e-100 369.0 256 69.5
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.1e-100 369.0 253 70.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.2e-99 367.1 250 69.2
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.2e-99 367.1 252 70.6
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.2e-99 367.1 252 70.2
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.2e-99 367.1 246 72.0
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 2.6e-99 365.9 253 71.9
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 7.5e-99 364.4 267 66.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 9.8e-99 364.0 232 74.1
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.3e-98 363.6 253 68.4
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.7e-98 363.2 259 68.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 2.9e-98 362.5 248 69.4
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.7e-98 362.1 265 67.9
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.4e-97 360.1 253 69.2
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.4e-97 360.1 254 67.7
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 1.9e-97 359.8 266 66.5
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 2.4e-97 359.4 257 68.9
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 4.1e-97 358.6 248 68.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 5.4e-97 358.2 257 67.3
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.2e-96 357.1 239 70.3
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 2.7e-96 355.9 275 65.5
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 4.6e-96 355.1 257 69.3
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 6.0e-96 354.8 252 65.1
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.8e-96 354.4 243 68.7
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.0e-95 354.0 257 66.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.3e-95 353.6 269 62.8
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.7e-95 353.2 256 68.4
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 1.7e-95 353.2 269 63.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 5.1e-95 351.7 265 65.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 5.1e-95 351.7 257 66.1
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.1e-94 350.5 240 69.6
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.1e-94 350.5 252 63.9
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.9e-94 349.7 251 64.9
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 3.3e-94 349.0 249 65.5
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.3e-94 348.6 282 61.7
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 2.1e-93 346.3 259 66.0
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.7e-93 345.1 254 65.4
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 6.2e-93 344.7 245 64.5
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 6.2e-93 344.7 245 65.3
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 8.1e-93 344.4 240 67.1
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 8.1e-93 344.4 245 64.1
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 8.1e-93 344.4 245 65.7
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 1.4e-92 343.6 252 64.3
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.1e-92 342.4 256 61.7
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.2e-91 340.5 254 62.6
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 2.0e-91 339.7 315 55.9
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.0e-91 339.7 247 64.8
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 3.4e-91 339.0 259 61.8
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 7.6e-91 337.8 257 61.9
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 7.6e-91 337.8 258 62.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 9.9e-91 337.4 255 62.7
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 2.2e-90 336.3 244 63.9
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.9e-90 335.9 249 62.2
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.9e-90 335.9 254 61.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.9e-90 335.9 261 63.6
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.9e-90 335.9 261 63.6
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 3.7e-90 335.5 254 61.0
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.7e-90 335.5 254 61.4
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.7e-90 335.5 254 61.0
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.4e-90 334.7 258 61.2
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.4e-89 333.6 234 67.9
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-89 333.2 251 62.9
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.9e-89 333.2 252 62.3
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.4e-89 332.8 256 60.9
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 4.1e-89 332.0 257 60.3
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 4.1e-89 332.0 250 62.4
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 7.1e-89 331.3 250 62.0
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 2.1e-88 329.7 250 61.6
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 1.3e-87 327.0 251 62.2
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 1.3e-87 327.0 251 62.2
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.7e-87 326.6 250 61.6
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 6.6e-87 324.7 247 68.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.1e-86 323.9 253 64.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 4.2e-81 305.4 285 55.8
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 3.5e-80 302.4 200 72.0
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.3e-79 300.4 214 64.5
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.7e-79 300.1 200 71.0
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 1.5e-78 297.0 213 68.5
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 9.6e-78 294.3 188 73.4
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.8e-77 292.7 189 68.8
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 4.8e-77 292.0 248 58.1
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 7.6e-75 284.6 169 77.5
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.4e-73 280.4 259 55.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.3e-73 277.7 256 55.1
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.0e-71 274.2 250 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.6e-69 266.9 225 57.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.2e-67 260.8 181 65.7
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 9.9e-67 257.7 240 55.8
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.2e-65 252.7 193 56.5
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 3.9e-63 245.7 170 65.9
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.1e-60 237.7 193 58.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.9e-57 226.9 261 49.4
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 3.2e-57 226.1 129 80.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.0e-55 221.1 113 96.5
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 1.8e-55 220.3 221 50.2
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.2e-51 207.6 189 52.9
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.2e-50 203.4 257 46.3
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 7.2e-49 198.4 139 68.3
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.6e-48 197.2 130 71.5
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 6.3e-45 185.3 126 69.0
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 3.4e-43 179.5 128 60.9
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.0e-42 175.6 282 39.4
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 4.2e-41 172.6 217 41.5
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 9.4e-41 171.4 140 62.1
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.2e-40 171.0 112 70.5
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 2.5e-38 163.3 125 67.2
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.3e-37 161.0 250 36.8
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 3.7e-37 159.5 230 44.8
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 9.4e-25 118.2 79 69.6
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.8e-20 104.0 65 69.2
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.2e-19 101.3 96 50.0
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 5.5e-17 92.4 60 71.7
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 3.6e-08 63.2 69 49.3
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 3.0e-07 60.1 152 27.6


User provided reference genes

Program Settings