Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.1e-309 1064.3 539 100.0
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.0e-301 1037.3 539 98.0
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 4.8e-294 1013.8 535 94.8
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 2.7e-289 998.0 539 94.6
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.8e-278 961.4 539 92.6
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 9.1e-277 956.4 539 92.0
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 9.8e-223 776.9 538 74.2
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 2.2e-214 749.2 540 71.9
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 3.9e-211 738.4 531 69.5
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 3.9e-211 738.4 539 69.6
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 5.2e-208 728.0 525 69.7
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 1.2e-207 726.9 525 70.3
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.2e-207 726.9 537 69.1
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 4.4e-207 724.9 537 67.6
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 5.8e-207 724.5 525 70.3
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 3.8e-206 721.8 516 70.5
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 8.4e-206 720.7 528 68.4
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 1.4e-205 719.9 516 70.5
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 1.4e-205 719.9 525 68.8
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.4e-205 719.2 540 67.8
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 2.1e-204 716.1 528 68.0
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 2.7e-204 715.7 525 69.1
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 1.0e-203 713.8 541 68.9
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 1.7e-203 713.0 544 66.9
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 3.0e-203 712.2 528 67.8
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 3.9e-203 711.8 523 69.8
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 8.7e-203 710.7 538 66.9
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 8.7e-203 710.7 525 68.4
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.5e-202 709.9 528 67.2
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.5e-202 709.9 516 69.0
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 7.3e-202 707.6 516 69.6
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 7.3e-202 707.6 527 67.2
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 9.6e-202 707.2 525 67.6
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 4.7e-201 704.9 527 67.0
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.2e-199 700.3 528 67.0
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 5.8e-199 698.0 536 67.0
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 7.6e-199 697.6 516 68.2
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.1e-197 693.7 536 66.2
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.1e-197 693.7 529 67.1
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 1.1e-197 693.7 516 67.6
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.4e-197 692.6 516 67.8
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 7.1e-197 691.0 536 64.9
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 9.3e-197 690.6 540 65.6
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 2.1e-196 689.5 513 67.6
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 2.7e-196 689.1 523 66.0
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 4.6e-196 688.3 518 68.5
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 7.8e-196 687.6 521 67.2
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 1.7e-195 686.4 525 65.9
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.7e-195 686.4 533 66.2
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.3e-195 686.0 535 64.9
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.3e-195 686.0 536 66.6
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-194 683.7 540 66.1
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 1.1e-194 683.7 525 66.1
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 3.3e-194 682.2 529 65.6
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 6.2e-193 677.9 541 63.6
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 8.1e-193 677.6 527 66.2
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 1.4e-192 676.8 522 67.2
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 2.4e-192 676.0 517 65.4
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 4.5e-191 671.8 521 65.5
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 3.8e-190 668.7 523 63.7
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 3.8e-190 668.7 518 65.1
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 8.4e-190 667.5 526 66.0
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 1.1e-189 667.2 525 64.4
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 4.2e-189 665.2 526 65.4
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 7.1e-189 664.5 528 65.5
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 3.5e-188 662.1 525 64.8
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 7.9e-188 661.0 518 65.1
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.8e-187 659.8 526 64.8
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 2.3e-187 659.4 526 65.4
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.1e-186 657.1 526 65.2
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.5e-186 656.8 526 65.2
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 4.3e-186 655.2 522 64.9
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 5.6e-186 654.8 524 65.5
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.6e-185 653.3 527 62.8
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 2.8e-185 652.5 531 64.6
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 4.8e-185 651.7 540 60.4
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 8.1e-185 651.0 526 64.8
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 2.4e-184 649.4 575 60.5
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 5.8e-183 644.8 576 57.8
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.2e-182 642.9 528 62.3
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 2.9e-182 642.5 483 67.3
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 1.4e-181 640.2 575 59.8
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 3.2e-181 639.0 516 64.1
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 3.2e-181 639.0 536 60.1
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 4.2e-181 638.6 528 63.1
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 9.3e-181 637.5 536 61.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 1.6e-180 636.7 538 60.8
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.7e-180 636.0 541 63.2
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 2.7e-180 636.0 451 67.4
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 3.5e-180 635.6 521 63.1
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 7.9e-180 634.4 528 62.5
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.0e-179 634.0 528 62.7
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 4.3e-178 628.6 538 59.7
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 5.6e-178 628.2 618 56.3
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 9.6e-178 627.5 516 61.2
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 3.7e-177 625.5 534 59.7
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.6e-175 619.4 503 63.8
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 6.0e-172 608.2 588 57.8
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 4.8e-169 598.6 436 69.0
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 8.2e-169 597.8 571 57.3
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.7e-166 590.1 526 59.1
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 3.9e-163 578.9 469 62.7
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 5.1e-163 578.6 511 58.5
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 9.7e-162 574.3 511 58.7
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.1e-160 570.9 531 57.8
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 4.1e-160 568.9 499 58.7
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 3.4e-159 565.8 569 55.0
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 1.7e-158 563.5 515 57.3
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.0e-150 537.7 411 67.2
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 1.7e-150 537.0 521 54.5
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.3e-146 522.7 513 56.9
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.6e-140 503.8 457 58.2
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.4e-139 500.7 385 64.9
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 2.7e-135 486.5 436 58.0
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.5e-133 479.9 491 55.8
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 3.4e-130 469.5 448 60.9
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 7.0e-120 435.3 477 49.1
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 9.2e-120 434.9 521 46.4
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 7.3e-117 425.2 499 45.3
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 5.8e-114 415.6 519 44.3
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 9.2e-112 408.3 524 43.1
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 6.6e-110 402.1 331 65.3
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.3e-107 393.7 312 64.1
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 7.5e-106 388.7 505 42.4
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 4.9e-105 386.0 457 43.5
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 2.6e-98 363.6 512 42.8
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 7.8e-95 352.1 274 66.8
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.3e-89 334.7 352 52.6
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.7e-89 334.3 360 49.2
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 4.2e-88 329.7 521 41.1
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-84 318.2 295 57.3
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 8.4e-65 252.3 528 33.5
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.2e-50 205.3 125 81.6
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.6e-39 167.2 105 75.2
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 4.4e-29 133.7 65 95.4
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.4e-19 101.3 144 45.1
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-17 95.5 75 65.3
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 3.6e-15 87.4 118 48.3
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 5.2e-14 83.6 59 74.6
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 6.8e-14 83.2 62 71.0
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 9.8e-13 79.3 63 58.7
RcHm_v2.0_Chr1g0336821 Rosa chinensis HOM05D005033 ORTHO05D344473 3.7e-12 77.4 82 61.0
RcHm_v2.0_Chr1g0336791 Rosa chinensis HOM05D005033 ORTHO05D036613 5.4e-11 73.6 35 97.1
RcHm_v2.0_Chr4g0414881 Rosa chinensis HOM05D005033 ORTHO05D036613 2.3e-09 68.2 32 96.9
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 1.9e-08 65.1 68 47.1


User provided reference genes

Program Settings