Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G1000 Fragaria x ananassa HOM05D022494 ORTHO05D000074 6.8e-64 247.3 135 100.0
RcHm_v2.0_Chr1g0339581 Rosa chinensis HOM05D000151 ORTHO05D000074 6.2e-41 171.0 133 70.7
FvH4_7g10560 Fragaria vesca HOM05D000151 ORTHO05D000074 3.8e-38 161.8 135 74.8
FAN01G0812 Fragaria x ananassa HOM05D022494 ORTHO05D000074 7.8e-36 154.1 132 75.8
FAN06G1444 Fragaria x ananassa HOM05D022494 ORTHO05D000074 3.8e-22 108.6 77 94.8
FAN10G2116 Fragaria x ananassa HOM05D022494 ORTHO05D000074 3.2e-21 105.5 74 95.9
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 3.5e-20 102.1 78 57.7
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 2.3e-19 99.4 90 53.3
FAN12G2073 Fragaria x ananassa HOM05D004442 ORTHO05D002066 2.3e-19 99.4 90 53.3
FAN17G1827 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.9e-19 98.6 90 54.4
Haze_02452 Corylus avellana HOM05D000151 ORTHO05D000074 2.8e-17 92.4 73 56.2
MD13G1223500 Malus domestica HOM05D000151 ORTHO05D000074 1.1e-16 90.5 76 53.9
Cfa001991 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.4e-16 89.4 76 53.9
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 2.4e-16 89.4 75 57.3
CiPaw.16G031700 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.0e-16 88.6 78 47.4
Prupe.6G285500 Prunus persica HOM05D000151 ORTHO05D000074 1.5e-15 86.7 80 48.8
Cfa001654 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.6e-15 85.9 76 52.6
FvH4_4g26320 Fragaria vesca HOM05D000151 ORTHO05D000074 3.4e-15 85.5 86 45.3
MD16G1228400 Malus domestica HOM05D000151 ORTHO05D000074 2.9e-14 82.4 79 46.8
Manes.10G088310 Manihot esculenta HOM05D000151 ORTHO05D000074 3.8e-14 82.0 82 50.0
RcHm_v2.0_Chr3g0452431 Rosa chinensis HOM05D000151 ORTHO05D000074 3.8e-14 82.0 82 51.2
FAN12G0486 Fragaria x ananassa HOM05D000151 ORTHO05D000074 6.4e-14 81.3 86 39.5
FAN06G2466 Fragaria x ananassa HOM05D022494 ORTHO05D000074 8.4e-14 80.9 133 39.8
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 1.9e-13 79.7 84 46.4
Haze_16880 Corylus avellana HOM05D000151 ORTHO05D000074 4.2e-13 78.6 75 50.7
FvH4_4g05011 Fragaria vesca HOM05D000151 ORTHO05D000074 5.5e-13 78.2 83 43.4
FAN12G3589 Fragaria x ananassa HOM05D000151 ORTHO05D000074 5.5e-13 78.2 83 43.4
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 7.1e-13 77.8 80 41.2
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 7.1e-13 77.8 80 41.2
RcHm_v2.0_Chr4g0395901 Rosa chinensis HOM05D026880 ORTHO05D029589 1.6e-12 76.6 78 46.2
Haze_16879 Corylus avellana HOM05D000151 ORTHO05D000074 2.1e-12 76.3 79 49.4
FAN22G0114 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.1e-12 76.3 98 40.8
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 2.1e-12 76.3 77 46.8
Prupe.1G050400 Prunus persica HOM05D000151 ORTHO05D000074 2.7e-12 75.9 82 50.0
FAN17G1775 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.9e-11 72.0 67 44.8
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 5.1e-11 71.6 91 40.7
FAN22G1059 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.7e-11 70.9 79 41.8
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 2.5e-10 69.3 78 39.7
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.3e-10 68.9 82 41.5
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 9.6e-10 67.4 81 39.5
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 1.3e-09 67.0 86 43.0
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-09 67.0 83 42.2
Duzib151G0485 Durio zibethinus HOM05D000151 ORTHO05D000074 1.6e-09 66.6 85 36.5
arahy.Tifrunner.gnm1.ann1.U0YPSU Arachis hypogaea HOM05D000151 ORTHO05D000074 6.2e-09 64.7 56 50.0
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.4e-08 63.5 95 34.7
Potri.002G014500 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.4e-08 63.5 79 32.9
Sabra02G0011500 Salix brachista HOM05D000151 ORTHO05D000074 1.4e-08 63.5 79 32.9
Aqoxy5G01075 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.8e-08 63.2 87 39.1
FAN17G2353 Fragaria x ananassa HOM05D014495 ORTHO05D014615 1.8e-08 63.2 61 52.5
arahy.Tifrunner.gnm1.ann1.SZA14E Arachis hypogaea HOM05D000151 ORTHO05D000074 2.4e-08 62.8 56 48.2
FAN22G2091 Fragaria x ananassa HOM05D014495 ORTHO05D014615 2.4e-08 62.8 77 45.5
RcHm_v2.0_Chr4g0430571 Rosa chinensis HOM05D014495 ORTHO05D014615 2.4e-08 62.8 93 39.8
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.1e-08 62.4 76 39.5
TWI53G1253 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.1e-08 62.4 109 33.9
TWI63G1408 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.1e-08 62.4 86 37.2
Dinv27133 Davidia involucrata HOM05D000151 ORTHO05D000074 4.0e-08 62.0 73 38.4
FAN14G1586 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-08 62.0 77 42.9
Lalb_Chr13g0300791 Lupinus albus HOM05D000151 ORTHO05D000074 4.0e-08 62.0 55 45.5
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.0e-08 62.0 76 39.5
CSS0028834 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 5.3e-08 61.6 72 40.3
Dinv27123 Davidia involucrata HOM05D000151 ORTHO05D000074 5.3e-08 61.6 83 41.0
Duzib052G1217 Durio zibethinus HOM05D000151 ORTHO05D000074 5.3e-08 61.6 85 34.1
Gorai.010G001100 Gossypium raimondii HOM05D000151 ORTHO05D000074 5.3e-08 61.6 79 36.7
TWI74G0260 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 5.3e-08 61.6 90 35.6
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.9e-08 61.2 81 35.8
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 9.0e-08 60.8 88 37.5
Ciclev10001350m.g Citrus clementina HOM05D000151 ORTHO05D000074 1.2e-07 60.5 81 34.6
Nitab4.5_0000642g0140 Nicotiana tabacum HOM05D000151 ORTHO05D000074 1.2e-07 60.5 84 42.9
CSS0038976 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 1.5e-07 60.1 72 38.9
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 1.5e-07 60.1 82 35.4
arahy.Tifrunner.gnm1.ann1.RG5I3R Arachis hypogaea HOM05D000151 ORTHO05D000074 2.0e-07 59.7 85 31.8
CiPaw.01G271700 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.0e-07 59.7 45 46.7
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 2.0e-07 59.7 88 36.4
Manes.18G008400 Manihot esculenta HOM05D000151 ORTHO05D000074 2.0e-07 59.7 83 36.1
arahy.Tifrunner.gnm1.ann1.AQ7QDK Arachis hypogaea HOM05D000151 ORTHO05D000074 2.6e-07 59.3 56 46.4
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 2.6e-07 59.3 80 40.0
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 2.6e-07 59.3 88 36.4
Hma1.2p1_2038F.1_g312030 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 4.5e-07 58.5 77 35.1
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 4.5e-07 58.5 84 38.1
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 4.5e-07 58.5 88 35.2
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.5e-07 58.5 76 38.2
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.5e-07 58.5 76 38.2
arahy.Tifrunner.gnm1.ann1.QH76HY Arachis hypogaea HOM05D000151 ORTHO05D000074 7.6e-07 57.8 56 44.6
arahy.Tifrunner.gnm1.ann1.S5CNIB Arachis hypogaea HOM05D000151 ORTHO05D000074 7.6e-07 57.8 56 42.9
FAN07G2945 Fragaria x ananassa HOM05D014495 ORTHO05D014615 7.6e-07 57.8 64 48.4
Os04g0162600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 7.6e-07 57.8 82 36.6
Rhsim03G0212000 Rhododendron simsii HOM05D000002 ORTHO05D001134 7.6e-07 57.8 78 35.9
arahy.Tifrunner.gnm1.ann1.K2BGZI Arachis hypogaea HOM05D000151 ORTHO05D000074 1.0e-06 57.4 56 42.9
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.0e-06 57.4 87 34.5
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 1.0e-06 57.4 86 33.7
PGSC0003DMG402009543 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.0e-06 57.4 75 40.0
A03p18620 Brassica napus HOM05D001487 ORTHO05D001365 1.3e-06 57.0 78 30.8
BraA03t11121Z Brassica rapa HOM05D001487 ORTHO05D001365 1.3e-06 57.0 78 30.8
Cc06_g19480 Coffea canephora HOM05D000151 ORTHO05D000074 1.3e-06 57.0 79 38.0
Rhsim09G0016500 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.3e-06 57.0 87 36.8
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 1.3e-06 57.0 85 36.5
RcHm_v2.0_Chr6g0254481 Rosa chinensis HOM05D000151 ORTHO05D000074 1.3e-06 57.0 81 37.0
Solyc08g006180.4 Solanum lycopersicum HOM05D000151 ORTHO05D000074 1.7e-06 56.6 75 40.0
arahy.Tifrunner.gnm1.ann1.EK4ZNN Arachis hypogaea HOM05D000151 ORTHO05D000074 2.2e-06 56.2 56 44.6
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 2.2e-06 56.2 88 36.4
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 2.2e-06 56.2 82 35.4
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.2e-06 56.2 79 32.9
Hma1.2p1_0112F.1_g054880 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 2.2e-06 56.2 96 37.5
BcaC01g05856 Brassica carinata HOM05D001487 ORTHO05D001365 2.9e-06 55.8 78 29.5
C03p21720 Brassica napus HOM05D001487 ORTHO05D001365 2.9e-06 55.8 78 29.5
BolC3t14555H Brassica oleracea HOM05D001487 ORTHO05D001365 2.9e-06 55.8 78 29.5
Sopen08g002150 Solanum pennellii HOM05D000151 ORTHO05D000074 2.9e-06 55.8 75 40.0
MBI12_g28746_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.8e-06 55.5 76 35.5
Nitab4.5_0000025g0120 Nicotiana tabacum HOM05D000151 ORTHO05D000074 3.8e-06 55.5 75 38.7
Nitab4.5_0003259g0030 Nicotiana tabacum HOM05D000151 ORTHO05D000074 3.8e-06 55.5 75 38.7
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.9e-06 55.1 94 35.1
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.9e-06 55.1 94 35.1
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 6.5e-06 54.7 85 37.6
Cc11_g10930 Coffea canephora HOM05D000151 ORTHO05D000074 6.5e-06 54.7 81 40.7
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.5e-06 54.7 80 32.5
QL01p002550 Quercus lobata HOM05D000151 ORTHO05D000074 6.5e-06 54.7 77 35.1
Thecc.04G266500 Theobroma cacao HOM05D000151 ORTHO05D000074 6.5e-06 54.7 93 32.3
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.5e-06 54.7 81 33.3
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 8.4e-06 54.3 82 34.1
FAN05G1169 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.4e-06 54.3 70 40.0
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 8.4e-06 54.3 68 41.2


User provided reference genes

Program Settings