Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G0923 Fragaria x ananassa HOM05D011155 ORTHO05D019121 1.0e-119 433.3 209 100.0
FvH4_7g12150 Fragaria vesca HOM05D011155 ORTHO05D019121 6.7e-111 404.1 209 93.8
FAN06G4899 Fragaria x ananassa HOM05D011155 ORTHO05D019121 1.1e-100 370.2 195 92.3
FAN01G2013 Fragaria x ananassa HOM05D011155 ORTHO05D019121 1.0e-95 353.6 174 95.4
FAN10G0234 Fragaria x ananassa HOM05D011155 ORTHO05D019121 4.8e-85 318.2 170 91.2
FAN06G1369 Fragaria x ananassa HOM05D011155 ORTHO05D019121 2.0e-83 312.8 160 92.5
RcHm_v2.0_Chr1g0350911 Rosa chinensis HOM05D011155 ORTHO05D019121 1.2e-78 297.0 204 73.0
FAN10G2386 Fragaria x ananassa HOM05D011155 ORTHO05D019121 4.5e-75 285.0 142 93.0
FAN13G0202 Fragaria x ananassa HOM05D010397 ORTHO05D025418 1.8e-18 97.1 152 40.8
FvH4_5g35290 Fragaria vesca HOM05D010397 ORTHO05D000952 1.1e-17 94.4 158 40.5
FAN18G2210 Fragaria x ananassa HOM05D010397 ORTHO05D000952 5.7e-17 92.0 158 40.5
FAN05G5746 Fragaria x ananassa HOM05D002630 ORTHO05D000952 9.6e-17 91.3 165 35.2
FvH4_6g26310 Fragaria vesca HOM05D002630 ORTHO05D000952 1.3e-16 90.9 165 35.2
FAN02G0323 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.3e-16 90.9 165 35.2
FAN09G0542 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.3e-16 90.9 165 35.2
RcHm_v2.0_Chr2g0126751 Rosa chinensis HOM05D002630 ORTHO05D000952 1.3e-16 90.9 173 35.3
Prupe.8G097100 Prunus persica HOM05D011155 ORTHO05D000952 6.2e-16 88.6 172 35.5
FAN13G0304 Fragaria x ananassa HOM05D010397 ORTHO05D000952 8.2e-16 88.2 173 35.8
MD11G1138500 Malus domestica HOM05D011155 ORTHO05D000952 1.1e-15 87.8 163 36.2
RcHm_v2.0_Chr3g0454651 Rosa chinensis HOM05D000010 ORTHO05D000952 1.1e-15 87.8 137 37.2
Ciclev10013626m.g Citrus clementina HOM05D002630 ORTHO05D000952 4.0e-15 85.9 162 35.2
Ciclev10013730m.g Citrus clementina HOM05D002630 ORTHO05D000952 5.3e-15 85.5 162 35.2
FvH4_7g06570 Fragaria vesca HOM05D008426 ORTHO05D000952 5.3e-15 85.5 141 35.5
FAN11G2329 Fragaria x ananassa HOM05D002630 ORTHO05D000952 5.3e-15 85.5 166 31.3
RcHm_v2.0_Chr1g0333911 Rosa chinensis HOM05D008426 ORTHO05D000952 9.0e-15 84.7 164 30.5
FAN09G1889 Fragaria x ananassa HOM05D011155 ORTHO05D000952 1.2e-14 84.3 169 34.9
FAN21G3454 Fragaria x ananassa HOM05D008426 ORTHO05D000952 1.5e-14 84.0 168 30.4
Prupe.6G103600 Prunus persica HOM05D011155 ORTHO05D000952 1.5e-14 84.0 159 39.0
Thecc.10G133400 Theobroma cacao HOM05D002630 ORTHO05D000952 1.5e-14 84.0 124 37.9
FvH4_6g26330 Fragaria vesca HOM05D011155 ORTHO05D000952 2.0e-14 83.6 159 34.6
FAN04G1077 Fragaria x ananassa HOM05D010397 ORTHO05D000952 2.0e-14 83.6 158 36.7
Prupe.6G057300 Prunus persica HOM05D002630 ORTHO05D000952 2.0e-14 83.6 153 35.3
Prupe.8G095200 Prunus persica HOM05D011155 ORTHO05D000952 2.0e-14 83.6 172 34.9
FvH4_3g25200 Fragaria vesca HOM05D002630 ORTHO05D000952 2.6e-14 83.2 166 30.7
FAN06G3625 Fragaria x ananassa HOM05D008426 ORTHO05D000952 2.6e-14 83.2 141 34.8
Prupe.6G098300 Prunus persica HOM05D011155 ORTHO05D000952 2.6e-14 83.2 179 35.2
FAN05G1528 Fragaria x ananassa HOM05D011155 ORTHO05D000952 4.5e-14 82.4 169 34.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-14 82.4 193 30.1
Ciclev10013691m.g Citrus clementina HOM05D002630 ORTHO05D000952 5.8e-14 82.0 138 37.7
Ciclev10013879m.g Citrus clementina HOM05D002630 ORTHO05D000952 5.8e-14 82.0 138 37.7
FAN10G4302 Fragaria x ananassa HOM05D008426 ORTHO05D000952 5.8e-14 82.0 138 35.5
FvH4_5g31040 Fragaria vesca HOM05D010397 ORTHO05D000952 7.6e-14 81.6 157 35.0
COL.COLO4_33115 Corchorus olitorius HOM05D002630 ORTHO05D000952 1.3e-13 80.9 154 32.5
Lj5g0002813 Lotus japonicus HOM05D002630 ORTHO05D000952 1.7e-13 80.5 165 29.1
RcHm_v2.0_Chr6g0266631 Rosa chinensis HOM05D002630 ORTHO05D000952 2.9e-13 79.7 174 29.9
Thecc.10G134900 Theobroma cacao HOM05D002630 ORTHO05D000952 2.9e-13 79.7 156 33.3
FAN02G3382 Fragaria x ananassa HOM05D011155 ORTHO05D000952 6.5e-13 78.6 124 36.3
FAN02G3776 Fragaria x ananassa HOM05D008426 ORTHO05D000952 6.5e-13 78.6 180 30.6
RcHm_v2.0_Chr7g0231191 Rosa chinensis HOM05D002630 ORTHO05D000952 1.1e-12 77.8 130 33.8
FvH4_6g51360 Fragaria vesca HOM05D008426 ORTHO05D000952 1.4e-12 77.4 167 31.7
Prupe.3G111400 Prunus persica HOM05D002630 ORTHO05D000952 1.4e-12 77.4 139 32.4
FAN14G4734 Fragaria x ananassa HOM05D008426 ORTHO05D000952 1.9e-12 77.0 167 31.7
Prupe.3G065000 Prunus persica HOM05D002630 ORTHO05D000952 3.2e-12 76.3 171 26.9
FAN01G3145 Fragaria x ananassa HOM05D002630 ORTHO05D000952 4.2e-12 75.9 131 34.4
FAN03G2513 Fragaria x ananassa HOM05D002630 ORTHO05D000952 5.5e-12 75.5 131 34.4
Atru.chr1.1697 Acer truncatum HOM05D002630 ORTHO05D000952 7.1e-12 75.1 163 31.3
FvH4_7g11470 Fragaria vesca HOM05D002630 ORTHO05D000952 7.1e-12 75.1 131 34.4
FAN06G2160 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.1e-12 75.1 131 34.4
FAN06G5033 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.1e-12 75.1 131 34.4
FAN05G2222 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.1e-11 73.6 132 31.8
Atru.chr5.426 Acer truncatum HOM05D002630 ORTHO05D000952 2.7e-11 73.2 145 31.7
Atru.chr5.447 Acer truncatum HOM05D002630 ORTHO05D000952 2.7e-11 73.2 133 32.3
FvH4_5g27770 Fragaria vesca HOM05D008426 ORTHO05D025493 2.7e-11 73.2 191 30.9
FAN02G4413 Fragaria x ananassa HOM05D002630 ORTHO05D000952 4.6e-11 72.4 133 32.3
Atru.chr5.431 Acer truncatum HOM05D002630 ORTHO05D000952 6.1e-11 72.0 145 31.0
FvH4_5g29860 Fragaria vesca HOM05D008426 ORTHO05D025493 6.1e-11 72.0 189 31.2
FvH4_5g25510 Fragaria vesca HOM05D002630 ORTHO05D000952 7.9e-11 71.6 130 32.3
FAN08G3500 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.9e-11 71.6 130 31.5
FAN14G5613 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.9e-11 71.6 133 31.6
FAN18G1467 Fragaria x ananassa HOM05D008426 ORTHO05D025493 7.9e-11 71.6 189 31.2
FAN18G3807 Fragaria x ananassa HOM05D002630 ORTHO05D000952 7.9e-11 71.6 130 32.3
MD11G1074200 Malus domestica HOM05D002630 ORTHO05D000952 7.9e-11 71.6 140 32.1
Atru.chr5.457 Acer truncatum HOM05D001542 ORTHO05D000952 1.0e-10 71.2 145 30.3
FvH4_5g25360 Fragaria vesca HOM05D002630 ORTHO05D000952 1.0e-10 71.2 138 34.1
FvH4_6g39600 Fragaria vesca HOM05D002630 ORTHO05D000952 1.0e-10 71.2 133 32.3
Prupe.1G106100 Prunus persica HOM05D011155 ORTHO05D000952 1.3e-10 70.9 176 33.0
QL03p072530 Quercus lobata HOM05D002630 ORTHO05D000952 1.3e-10 70.9 208 28.4
CiPaw.07G101400 Carya illinoinensis HOM05D002630 ORTHO05D000952 1.8e-10 70.5 138 33.3
FvH4_6g39580 Fragaria vesca HOM05D002630 ORTHO05D000952 1.8e-10 70.5 130 33.1
FAN09G2675 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.8e-10 70.5 136 31.6
FAN14G3453 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.8e-10 70.5 130 33.1
FAN18G2012 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.8e-10 70.5 138 33.3
FAN18G3393 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.8e-10 70.5 138 33.3
MD11G1075500 Malus domestica HOM05D002630 ORTHO05D000952 2.3e-10 70.1 162 35.2
RcHm_v2.0_Chr5g0048841 Rosa chinensis HOM05D002630 ORTHO05D000952 2.3e-10 70.1 164 29.9
Atru.chr12.1167 Acer truncatum HOM05D002630 ORTHO05D000952 3.0e-10 69.7 133 29.3
FAN02G1492 Fragaria x ananassa HOM05D002630 ORTHO05D000952 3.0e-10 69.7 133 32.3
FAN07G2769 Fragaria x ananassa HOM05D002630 ORTHO05D000952 3.0e-10 69.7 131 35.1
Sed0020443 Sechium edule HOM05D002630 ORTHO05D000952 3.0e-10 69.7 190 28.4
FAN17G1202 Fragaria x ananassa HOM05D002630 ORTHO05D000952 3.9e-10 69.3 149 34.9
QL03p071640 Quercus lobata HOM05D002630 ORTHO05D000952 5.1e-10 68.9 131 32.8
FAN08G1554 Fragaria x ananassa HOM05D002630 ORTHO05D000952 6.7e-10 68.6 130 30.8
FvH4_6g39190 Fragaria vesca HOM05D002630 ORTHO05D000952 8.7e-10 68.2 104 35.6
FvH4_6g39200 Fragaria vesca HOM05D002630 ORTHO05D000952 8.7e-10 68.2 104 35.6
FAN05G0057 Fragaria x ananassa HOM05D002630 ORTHO05D000952 8.7e-10 68.2 103 34.0
FAN05G2844 Fragaria x ananassa HOM05D002630 ORTHO05D000952 8.7e-10 68.2 104 35.6
FAN14G2281 Fragaria x ananassa HOM05D002630 ORTHO05D000952 8.7e-10 68.2 104 35.6
FAN14G5590 Fragaria x ananassa HOM05D002630 ORTHO05D000952 8.7e-10 68.2 104 35.6
MD11G1075600 Malus domestica HOM05D002630 ORTHO05D000952 8.7e-10 68.2 175 31.4
MD15G1393000 Malus domestica HOM05D002630 ORTHO05D000952 8.7e-10 68.2 175 30.9
FAN09G4772 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.1e-09 67.8 104 35.6
FAN04G1225 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.5e-09 67.4 130 32.3
FAN12G0860 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.5e-09 67.4 149 34.2
FAN12G3767 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.5e-09 67.4 149 34.2
Potri.016G027900 Populus trichocarpa HOM05D002630 ORTHO05D000952 1.5e-09 67.4 151 31.1
FvH4_4g12410 Fragaria vesca HOM05D002630 ORTHO05D000952 1.9e-09 67.0 148 33.1
Nitab4.5_0000016g0550 Nicotiana tabacum HOM05D010426 ORTHO05D003796 1.9e-09 67.0 135 31.9
Nitab4.5_0007033g0010 Nicotiana tabacum HOM05D010426 ORTHO05D003796 2.5e-09 66.6 135 31.9
Nitab4.5_0007033g0050 Nicotiana tabacum HOM05D010426 ORTHO05D003796 3.3e-09 66.2 128 32.8
QL03p072148 Quercus lobata HOM05D002630 ORTHO05D000952 3.3e-09 66.2 138 34.8
Nitab4.5_0000016g0630 Nicotiana tabacum HOM05D010426 ORTHO05D003796 4.3e-09 65.9 128 32.0
QL03p071354 Quercus lobata HOM05D002630 ORTHO05D000952 7.4e-09 65.1 137 34.3
Sopen04g028190 Solanum pennellii HOM05D007636 ORTHO05D003796 7.4e-09 65.1 129 31.0
Prupe.1G575600 Prunus persica HOM05D002630 ORTHO05D000952 1.3e-08 64.3 129 31.0
Ciclev10023292m.g Citrus clementina HOM05D002630 ORTHO05D000952 1.6e-08 63.9 129 30.2
Potri.015G002900 Populus trichocarpa HOM05D002630 ORTHO05D000952 1.6e-08 63.9 166 30.1
Sopen04g028020 Solanum pennellii HOM05D007636 ORTHO05D003796 2.2e-08 63.5 131 30.5
Sopen04g028280 Solanum pennellii HOM05D007636 ORTHO05D003796 2.2e-08 63.5 131 30.5
FAN18G3062 Fragaria x ananassa HOM05D008426 ORTHO05D016292 3.7e-08 62.8 124 33.9
Nitab4.5_0000016g0580 Nicotiana tabacum HOM05D010426 ORTHO05D003796 3.7e-08 62.8 157 29.9
Nitab4.5_0002723g0030 Nicotiana tabacum HOM05D007636 ORTHO05D003796 4.8e-08 62.4 145 29.0
RcHm_v2.0_Chr7g0235081 Rosa chinensis HOM05D008426 ORTHO05D000952 4.8e-08 62.4 120 31.7
Peaxi162Scf00811g00013 Petunia axillaris HOM05D007636 ORTHO05D003796 6.3e-08 62.0 135 31.9
Peaxi162Scf00811g00023 Petunia axillaris HOM05D007636 ORTHO05D003796 6.3e-08 62.0 135 31.9
Peaxi162Scf02167g00001 Petunia axillaris HOM05D007636 ORTHO05D003796 6.3e-08 62.0 135 31.9
RcHm_v2.0_Chr5g0056721 Rosa chinensis HOM05D002630 ORTHO05D000952 6.3e-08 62.0 172 27.9
RcHm_v2.0_Chr6g0271921 Rosa chinensis HOM05D002630 ORTHO05D000952 6.3e-08 62.0 130 29.2
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-07 61.2 200 27.5
Ciclev10024200m.g Citrus clementina HOM05D002630 ORTHO05D000952 1.4e-07 60.8 98 33.7
FvH4_5g30540 Fragaria vesca HOM05D010397 ORTHO05D025418 1.4e-07 60.8 119 37.0
FAN16G2543 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.4e-07 60.1 163 30.1
QL03p071622 Quercus lobata HOM05D001391 ORTHO05D002605 3.1e-07 59.7 150 31.3
FvH4_3g25560 Fragaria vesca HOM05D002630 ORTHO05D000952 6.9e-07 58.5 163 30.1
RcHm_v2.0_Chr6g0266821 Rosa chinensis HOM05D002630 ORTHO05D000952 9.0e-07 58.2 94 34.0
Nitab4.5_0002160g0040 Nicotiana tabacum HOM05D009491 ORTHO05D003796 1.5e-06 57.4 132 31.1
QL03p071347 Quercus lobata HOM05D002630 ORTHO05D000952 1.5e-06 57.4 150 30.0
QL03p071564 Quercus lobata HOM05D002630 ORTHO05D000952 1.5e-06 57.4 111 31.5
Nitab4.5_0012115g0020 Nicotiana tabacum HOM05D007636 ORTHO05D003796 2.0e-06 57.0 139 33.1
Nitab4.5_0000016g0600 Nicotiana tabacum HOM05D007636 ORTHO05D003796 3.4e-06 56.2 160 31.9
Nitab4.5_0014265g0010 Nicotiana tabacum HOM05D007636 ORTHO05D003796 7.7e-06 55.1 139 29.5
ClCG06G017370 Citrullus lanatus HOM05D011305 ORTHO05D000952 1.0e-05 54.7 144 29.2
MD11G1219300 Malus domestica HOM05D002630 ORTHO05D000952 1.0e-05 54.7 141 29.1
Nitab4.5_0001463g0090 Nicotiana tabacum HOM05D007636 ORTHO05D003796 1.0e-05 54.7 148 29.7


User provided reference genes

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